Anguilla rostrata (American eel): 135258897
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Entry
135258897 CDS
T10705
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03013
Nucleocytoplasmic transport
arot03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
arot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135258897 (upf2)
mRNA cycle factors
P-body specific factors
135258897 (upf2)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF1722
Motif
Other DBs
NCBI-GeneID:
135258897
NCBI-ProteinID:
XP_064198636
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All DBs
Position
7:7194004..7218812
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AA seq
1288 aa
AA seq
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MLANNDMPAERNKSVNMDEKDVCSFLNKEKDKDRETERRPASSREKSKDETKACAKKDNG
KAAEEKRRRLEEDKRKKEEKDRKKKDEERLKAEEEQKQREEEERKLKEEEEKKRMQEEEE
KRQREEEANLLKEKEEGHQLHQEAWERHQSRKELRVRNQNAQEGRPEEAFFSRLDSSLKK
NTAFVKKLRTLTEQQREALSGDFASLNLSKYIAEAVASVVEAKLKISDVGCSVHLCSLFH
QRYADFAPLLLQAWRRHFEARKEEKTPNVSKLRTDLRFVAELTVVGLFTDREGLSLIYEQ
LKAIIGADRETHTHVSVVISFCKHCGDDVAGLVPRRVRAAAEKFGLAFPPSEIISAEKQQ
PFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLL
ANTQSLADLLDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYEN
MVDLKAFVPAILFKDNEKGLPGREREESKDAKEVKEVASTEELELELETLDIADDTLELE
AGDEAEGEEFAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCM
NMNTKANRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIR
KKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRF
LFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPVEKTVRKKRPPLQE
YIRKLLYKDLSKVTTEKVLRQMRKLPWQDAEVKNYLICCMVNIWNVKYNSIHCVANLLAG
LVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVVFRTL
FSFISFGVSPDGAPSVLDPPEHLFRVRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYI
WWKKSTDVWTKEHPFPIDIDYMISDTLELLRPKMRLCCSLEEATRQVTELEREFLLKLGL
AMEKDGKCSSTMGEGEALDEEDDDDDEEGGAETEEQSGNESEMNDHEEEEGSENEEEERE
EEEEENTDYLTDSNKENETDEENNEVTIKGGGLKHVACAEDEDFIQALDKMMLENLQQRS
GESVKVHQLDVAIPLQLKSQLKKGPAPACSADADIADTADTMQFVMLTRKGNKQQFKILN
VPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRE
RRPRYQHPKGAPNADLIFKTGGRYYTYK
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgttagctaacaatgatatgcccgcggagcgcaacaagtcggtaaacatggacgagaaa
gatgtgtgttcgtttttaaacaaggagaaagacaaggaccgagagacagaaaggaggcct
gcctcttcccgggagaaatcgaaggatgagacgaaggcgtgtgcaaagaaagacaacggc
aaagccgcggaagagaaacggagacgtttggaagaggataagagaaagaaagaagagaaa
gaccgtaagaaaaaagacgaagaaaggttgaaagcagaggaggagcagaagcagagggaa
gaggaggaaaggaaactgaaagaggaagaggagaagaaaaggatgcaggaggaagaagag
aagagacagcgtgaagaagaggcaaatctactcaaagagaaggaggagggccaccagctc
caccaggaggcgtgggagcgccaccagtcgcgcaaggagctgcgcgtccgcaaccagaac
gcccaggagggccgccccgaggaggccttcttcagccgcctggactccagcctgaagaag
aacacggccttcgtcaagaagctgcgcacgctgaccgagcagcagcgcgaggcgctctcc
ggcgacttcgcctcgctcaacctcagcaagtacatcgccgaggcggtggcctcggtggtg
gaggccaagctgaagatctcggacgtgggctgctccgtgcacctgtgctcgctcttccac
cagcgctacgccgacttcgcgccgctcctgctgcaggcctggcggcggcacttcgaggcg
cgcaaggaggagaagacgcccaacgtgagcaagctgcgcaccgacctgcgcttcgtcgcc
gagctgacggtggtgggcctgttcaccgaccgcgagggcctgtcgctcatctacgagcag
ctcaaggccatcatcggcgccgaccgcgagacgcacacccacgtctccgtggtgatcagc
ttctgcaagcactgcggcgacgacgtggccggcctggtgccgcgccgggtccgggcggcg
gccgagaagttcggcctggccttcccgcccagcgagatcatcagcgccgagaagcagcag
cccttccagaaccttctgcgggagtacttcacctccctcaccaagcacctgaagaaggac
caccgcgagctgcagaacatcgagaggcagaacaggcgtatcctgcattccaaaggggag
ctgagcgaagacagacacaagcagtacgaggagttcgccacctcgtaccagaagctcctg
gccaacacgcagtcgctggcagacctgctggacgagaacatgccagacctgccccaggat
aagaccgtgcaggaagagcacggcccgggcattgacatcttcaccccggggaagccgggg
gagtacgacctggagggggggatttgggaggacgaggacgcgcgaaacttctacgagaac
atggtggacctgaaggccttcgtccccgccatcctcttcaaggacaacgagaagggcctg
ccgggcagagagagggaggaaagcaaagatgccaaagaggtgaaggaggtggccagcacg
gaggagctggagctggaactggagaccctggacatcgcggacgacaccctggagctggag
gccggtgacgaggcggagggggaggagttcgccaagaagcttctggacgagcaagaacaa
gaggacgaggaggccagcactggctctcacctgaagctcatcgtagacgccttcatccag
cagctgcccaactgcgtcaacagagacctaatcgacaaggccgccatggatttctgcatg
aacatgaacaccaaggctaaccggaggaagctagtccgggctctcttcactgttccacgg
caacggctggacctcctcccgttctactcccgcctggtggccaccctgcacccctgcatg
tcggacgtggctgaggacctgtgctccatgctgaagggggacttccggtttcacatcaga
aagaaggatcagatcaacatcgaaacgaaaaacaaaacagtgcgattcattggggagctc
gccaagttcaagatgttctccaaaacggacactcttcattgcctgaagatgctgctctcg
gacttctcccaccaccacattgagatggcctgcactctgctggagacctgcggccgcttc
ctcttcaggtccccggaatcgcacctgcgcaccagcgtgctcctggagcaaatgatgcgc
aagaagcaggccatgcacctggacgcgcgctacgtgaccatggtggagaacgcgtactac
tactgcaacccaccgcccgtggagaagaccgtgcggaagaagaggccgccgctgcaggag
tacatccgcaagctcctgtacaaggacctgtccaaggtcaccaccgagaaggtgctgagg
cagatgcggaagctgccctggcaggacgcggaggtgaagaattacctgatctgctgcatg
gtcaacatctggaacgtcaagtacaacagcatccactgcgtggccaacctgctggccggg
ctggtggcctaccaggaggacgtgggcatccacgtggtggacggggtgctggaggacatc
cggctcggcatggaggtgaaccagcccaagttcaaccagagacgcatcagcagcgccaag
ttcctgggcgagctctacaactaccgcatggtggagtcggcggtcgtcttccgcacgctc
ttctccttcatctcgttcggcgtgagccccgacggcgcccccagcgtcctggaccccccc
gagcacctcttccgcgtccgcatggtctgcaccctgctggacacctgcggccagtacttc
gaccgcggctccagcaagcggaagctcgactgcttcctcatctacttccagcgctacatc
tggtggaagaagagcacggacgtgtggacgaaggagcacccgttccccatcgacatcgac
tacatgatcagcgacacgctggagctgctccggcccaagatgaggctgtgctgctcgctg
gaggaggccacgcggcaggtcaccgagctggagagggagttcctgctcaagctgggcctg
gccatggaaaaggacggcaagtgctccagcaccatgggcgagggggaggccctggacgaa
gaggatgatgatgatgacgaagagggcggggccgagaccgaggagcagtctgggaatgag
agtgagatgaatgaccatgaagaggaggaggggtccgaaaacgaggaggaagagcgagag
gaagaggaggaagagaacacggactacctgaccgactccaacaaagagaacgaaacggac
gaggagaacaacgaggtgaccattaagggtgggggtctgaagcacgtggcctgcgctgag
gacgaggacttcattcaggctctggacaagatgatgctggagaacctgcagcagcggagc
ggcgagtcggtgaaggtgcaccagctggacgtggccatcccgctgcagctgaagagccag
ctgaagaagggccccgcccccgcctgcagcgccgacgccgacatcgccgacaccgccgac
accatgcagttcgtcatgctcaccaggaagggcaacaagcagcagtttaagatcctgaac
gtgccgctctcctcccacctggctgccaatcacttcaaccagcagcaggcggagcaggag
gagcgcatgcgcatgaagaagctcacgctcgacatcaacgagcgccaggagcaggaggac
taccaggagatgatgcagtccctggcccagcggcctgccccggccaacaccaaccgagag
aggcgaccgcggtaccagcaccccaagggggcgcccaacgccgacctcatcttcaagacc
ggaggaagatactacacgtacaagtga
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