Anguilla rostrata (American eel): 135261401
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Entry
135261401 CDS
T10705
Symbol
col16a1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
arot Anguilla rostrata (American eel)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135261401
NCBI-ProteinID:
XP_064203742
LinkDB
All DBs
Position
8:31181796..31250277
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AA seq
1628 aa
AA seq
DB search
MWVVWSSVLFTLVWLSIISCPCEGGRLVTDEAVRCPSLQVDEWRFPQTARHNITGFNLVR
RFGLLKLTGVKKIRNPNGPVILRLGKVPLTQPTDQVFPHGLPEEFTVVFTLLLKKKTVKD
NIYLFQISDEQGYPQFSLDLNGPERTLALRARGGGGGEDDFVGCVFGGEGVESLFDFRWH
KVAMSLQAGAASLHVDCGSIETKPVEPRAQLSTQGHTLLAIQASDGATVEMDVQQATVYC
DPELAIQEACCEIPGARCPPDAPKSRRAAESSPRANLVELLPRPDGKGILGPQDLADKCA
GCALLNEEQLVERGHIIDGLLHGIKGEKGDRGLDCSGSESSGLCSTGPKGEKGVKGEPGG
SGNWGDGARQKGEKGQKGETGMQGLSGFPGKDGRAGSICVVGPKGQKGTPGLVGPEGLAG
EPGRPGPPGEPGIGKPGPPGRPGGPPGSKGDKGDSGIPGKDAEPGDPGPRGPVGLKGAKG
DPCEVCPVLPTDGGNTVALPGKPGPKGDPGAPGIGVPGLAGLPGSDGKPGEKGEPGSGVK
GEKGEPCAVCPTLGELPANLNSVVLESNLKPGVKGEKGEAGTGEKGEKGEVGAVGLSGMT
GEKGSRGDKGSDGKPGKTGPRGPLGRDGPKGSKGDNGAKGETGPQGEKGDSCGSCVPPSE
AGGGPSFVKWPNAPGEPGPPGPPGPQGKPGDDVVGKPGDPGVMGSKGEKGDPGAQGDPGN
GGTPGTPGLPGEPGRDGFRGLKGEKGDACDSCPSLPEGSSGVGGLPGLKGERGDPGPPGL
GQPGKHGHPGLPGVQGPQGPKGSQGEPGIAGVGLPGPKGEQGPRGKHGVVGLPGKDGIPG
AAGQNGEKGSKGETGPPGPQGPAVEGVPGPSGKDGTPGRHGIPGEDGRPGPNGAKGDKGD
PGECSCQVPNFTGTGGPGAPGTAGLPLWQPGPQGPPGPPGPPGPPGPEGSAGVTGPQGHP
GNDGEPGKPGPPGNLLPRPIQDSGDETVVCGDCSHGSPGVPGVTGVKGEKGEQGTPGAGP
SDGCERCFQKVHRQESADSAGHGVPGLPGSPGEPGLKGEQGPPGQRGFAGSPGSIGPPGF
PGPAGPPGLAGQPGERGQPGPPGLKGESGPPGTPGYPGSMGPPGLPGLKGERGHPGGAGL
KGESGPPGTPGYQGSPGAAGSKGEIGLSGPAGPKGEQGFQGQPGFPGQQGPPGFPGKAGS
PGPPGPKAEKGTEGQRGSQGPTGPPGSPGSPGMPGPPGMEGLDGKDGKPGLRGELGPPGP
AGPRGIPGFKGKSGHVGFPGQKGDIGPQGPQGKIGRPGMDGDPGTPGPQGRPGPPGHLGA
TGPPGSPGPAGPPGVGVKGDKGQAGDRGLPGMAGLPGAPGHPGPLGEPGTDGAPGKDGAA
GLPGDSGQAGQKGEAGAPGQRGSPGERGRPGPPGGGYSSKDSGVGMMGPAGPRGERGPAG
LPGQSGSPGSPGTPGNDAVVNYDEIKSFIRQQVIKIFDERMAYYMSRVQTPVEVSAPGRP
GPPGKDGTPGRQGTPGMPGMPGQIGREGRQGPMGPPGAPGAKGDKGDKGIGEMGDSGPPG
SPGLPGSPGYGKMGPPGSVGQQGVPGIPGPPGTPGSPGKQGHCNPSDCFSGMPAEYNPKG
PPMKGPMY
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atgtgggtcgtatggtcatctgtgctgttcaccctggtgtggctgtccatcatctcctgt
ccgtgtgagggaggccgacttgtgactgatgaagccgtccgatgcccctccctacaggtg
gatgaatggaggtttccccagacagccagacacaacatcacaggtttcaatctggtgcgg
aggtttggcttgttgaagctcacgggggtgaagaagatccggaaccccaacgggcctgtg
atcctgagacttgggaaggtgccactcacccagcccactgatcaggtgttcccccatggg
ctgccagaagagttcactgtggtcttcactctgctgctgaagaaaaagactgtcaaggac
aacatctacctcttccagatctcagatgagcagggctaccctcagttctccctggacctg
aacgggccggagcggacgcttgccctgcgggcccgtggtgggggaggcggcgaggacgac
tttgtgggatgcgtgttcggcggggagggggtggagtctctcttcgacttccgctggcac
aaggtggcgatgagcctccaggcgggcgcggcctccctgcacgtggactgcggctccatc
gagaccaagccagtggagcccagagcgcagctgtccacgcagggacacaccttactggcc
atccaggcctccgacggagccaccgtagagatggatgtccagcaggcgacggtgtactgt
gaccctgagctggccatccaggaagcctgctgtgagatcccaggagcacggtgccctccc
gacgcgcccaagagccgccgcgccgccgaaagcagcccccgcgccaacctggtggagctg
ctgccacgccccgacggcaagggaatcctgggacctcaagacctagcagacaaatgtgct
gggtgtgccctgctcaacgaggaacaacttgttgaaagaggacacattattgatggattg
ctgcatggaataaaaggagagaagggagatcggggtttggactgctctggttctgaatcc
tcaggcctgtgctcgacggggcccaaaggagagaagggggtgaagggtgagccggggggc
tctggaaactggggagatggagctaggcagaagggggagaagggtcaaaagggtgagact
ggtatgcagggtctctctgggttcccgggaaaagatggtagagctgggtcgatatgtgtg
gtgggccccaaaggacagaagggcaccccagggctggtgggaccagagggcctggcagga
gaaccgggtcgcccaggcccccctggagagccgggtatcggcaaacctggaccaccgggg
aggccaggcggacctcctggttcgaagggggacaagggggattctgggatacctggcaag
gatgccgagcctggagatcctggacctagaggtcctgtgggtctgaagggagcgaaggga
gacccctgcgaagtctgccctgttttgcccacagacggggggaataccgtggccctccca
gggaagccggggcccaaaggagacccgggggccccagggataggggtgccaggtctggcg
ggcctccctggctcggacgggaagcctggcgagaagggagaaccagggtctggtgtgaaa
ggtgaaaagggagagccgtgcgccgtctgccccacattgggagagctccctgctaacctg
aactccgtggtcctggaatccaatctgaaacctggggtgaagggcgagaagggagaggct
ggaactggagagaagggggaaaagggggaagtaggggctgttggactttctggaatgaca
ggagagaagggtagccgtggtgacaagggatctgatgggaaaccgggcaagacaggaccg
agggggccgctgggtcgtgacgggccgaaaggatcgaagggtgacaatggggcgaagggc
gagacaggaccgcaaggggagaagggtgattcgtgtggttcttgtgtacctccctctgag
gcgggtgggggaccatcctttgtcaaatggccaaatgcgcctggggagccaggacctccc
gggcctccaggaccccaagggaaaccaggcgatgatgtggtggggaaaccgggggatcca
ggagtcatgggttcaaagggagaaaagggtgacccaggtgcacagggtgacccaggaaat
ggggggacccccggaaccccaggattaccaggagaacccgggagggatggcttccgtgga
ctgaagggagagaagggagacgcctgtgacagctgtccttcgctcccagagggatcgtcg
ggggtggggggtttgccgggactgaagggcgagagaggggaccctggccccccgggactt
ggtcaaccaggcaaacacggtcatccaggtctcccaggtgtccagggacctcagggaccc
aaaggcagtcagggtgaaccaggaattgcaggcgtgggtcttccaggacccaagggcgag
caaggacccaggggcaagcatggagttgttggacttccagggaaagacggtattccgggt
gctgcaggacagaatggggagaagggctctaaaggggagacggggcctccagggcctcag
gggcccgcggttgaaggggtgccggggccctcgggcaaggatggtacccctgggcggcac
gggattccgggcgaggacggacgtcctggacctaacggcgccaagggggacaagggtgac
cctggggagtgcagttgtcaggttccgaacttcactggaactggaggacctggagctcca
ggaactgctggccttcccttgtggcagcctggtccacagggtccccctggacctccagga
cccccaggcccaccagggccagaggggtccgcaggggttacaggaccgcagggccaccct
ggcaatgatggcgaaccagggaaaccgggtccgcccggcaacttactgccccgcccaatt
caagactccggggatgaaacggttgtctgtggggactgctcgcacggtagtccgggcgtt
ccaggtgtgacaggtgtcaagggcgagaagggagagcagggcacacctggggcaggtccc
agtgatggctgtgaaaggtgcttccagaaggtgcacaggcaggagagtgctgacagtgct
gggcatggtgtgccagggttaccagggagcccgggtgaaccaggactcaaaggcgagcag
ggtcctccaggtcaaaggggatttgctggctctcctggaagcataggtcctcctgggttt
ccaggtcctgcaggcccacctggattagctggtcaaccgggggagagggggcagcctgga
ccaccagggttgaagggggaaagtggtcctccaggaactcctggataccctggatctatg
ggaccccccggacttcctggccttaagggtgagagaggtcatccgggtggtgctgggctg
aaaggagaatcgggacctccgggcacccctggatatcagggttctccaggcgcggcaggt
tccaaaggtgaaataggcttgtcaggacccgctggaccaaagggtgaacagggtttccaa
ggacaaccaggatttccaggacaacaaggtccccctggtttcccaggcaaggcaggctcc
ccggggcccccaggaccgaaagctgagaagggcactgagggccagcggggctcccagggg
cccacgggaccccccggatcgcctggttctcctggcatgccgggacctcctgggatggag
ggattggatggaaaagatggaaagccaggactccggggagaacttggtccaccaggccca
gccggacccagaggaatcccgggtttcaaaggaaaatcaggacacgttggcttccccgga
cagaagggagatattggtcctcagggcccacaagggaagatcggccgacctggaatggat
ggagaccctggtacccctgggcctcagggccgacctgggcccccaggacaccttggcgct
acaggacctcctgggtctccaggccctgcgggacctccgggagtgggcgtgaagggggac
aagggtcaggctggagacagaggactgccggggatggccggcctacctggggctccaggg
cacccaggaccactgggagaaccaggcacggatggagccccggggaaagatggagccgct
gggctgcctggagacagtgggcaggcaggacagaagggcgaggcaggggccccgggacag
aggggctccccaggggagcgcggacgccctggccctccgggcggcgggtactcctcaaag
gactcgggcgtgggaatgatggggccagccgggccccgtggggagagagggcccgcagga
ctgcctggccagtccggatccccgggatcgccaggaacacctgggaatgatgcagtggtc
aactatgatgaaatcaagagcttcatccggcagcaggtcataaagatctttgatgagcgc
atggcgtactacatgtcccgcgtgcagacgcccgtggaggtttcagctcccgggcgaccc
ggtccccccggcaaggacggaacccctgggaggcaagggactccagggatgcctggcatg
ccgggacagatcggtagagaggggcgacagggacccatggggccaccgggtgcccctggt
gctaagggagataagggggataagggcattggtgagatgggtgacagtggcccaccagga
tctccaggtctccctggatctccaggctatgggaagatgggcccacctggatccgtagga
cagcagggagtaccagggatcccaggccctcctggtaccccaggatcacctgggaagcag
ggtcattgtaacccctcagactgcttcagcggtatgcccgctgagtacaaccccaagggc
ccccctatgaagggccccatgtactag
DBGET
integrated database retrieval system
