Anguilla rostrata (American eel): 135262252
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Entry
135262252 CDS
T10705
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03013
Nucleocytoplasmic transport
arot03015
mRNA surveillance pathway
arot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135262252 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
135262252 (ddx39b)
03015 mRNA surveillance pathway
135262252 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arot03019
]
135262252 (ddx39b)
03041 Spliceosome [BR:
arot03041
]
135262252 (ddx39b)
Enzymes [BR:
arot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135262252 (ddx39b)
Messenger RNA biogenesis [BR:
arot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135262252 (ddx39b)
Spliceosome [BR:
arot03041
]
Complex C
Other components
EJC/TREX
135262252 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135262252 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
135262252
NCBI-ProteinID:
XP_064205286
LinkDB
All DBs
Position
8:complement(56744855..56755647)
Genome browser
AA seq
436 aa
AA seq
DB search
MTENDVENELLDYEEDEVDGGGGVGDGLGAVSSDALTHRKEGLKGSYVSIHSSGFRDFLL
KPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG
QVSVLVMCHTRELAFQISKEYERFSKYMPAVKVGVFFGGLSIKKDEEVLKRESPHVVVGT
PGRILALSRNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS
REIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI
FVKSVQRCVALAQLLVEQNFPAIAIHRGMPQEERLARYQQFKDFQRRILVATNLFGRGMD
IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNIS
ELPEEIDISSYIEQSR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaacgacgttgagaacgagctcctggactacgaggaggacgaggttgacggg
ggaggaggagtgggcgacgggctgggggccgtgagcagcgacgccctgacgcacaggaag
gaagggctcaaaggctcgtacgtgtccatccactcgtccgggttccgggacttcctgctg
aagcccgagctcctgagggccatcgtggactgcgggttcgagcatccgtccgaggttcag
cacgagtgcatcccccaggccatcctgggcatggacgtgctctgccaggccaagtcgggc
atgggcaagacggccgtgttcgtgctggccaccctgcagcagctggagcccgtcaccggc
caggtgtcagtgctggtcatgtgccacacccgagagctggcctttcagatcagcaaggag
tacgagaggttctccaagtacatgccagccgtcaaggtgggcgtgttcttcgggggcctg
tccattaagaaggacgaggaggtgttgaagagggagagtccgcacgtggtggtggggacg
cccgggcgcatcctggccctgtcccgaaacaagaccctcaacctgcgccacatcaagcac
ttcatcctggacgagtgcgacaagatgctggagcagctcgacatgcgccgggacgtgcag
gagatcttccgcatgacgccacacgagaagcaggtcatgatgttcagcgccaccctgagc
cgagagatccggcccgtctgccgaaagttcatgcaagatccaatggaaatctttgtggac
gatgagacgaaactgactctgcatggcctgcagcagtactatgtcaagctcaaggacaac
gagaagaacaggaagctctttgatctgctggacgtgctggagttcaaccaggtggtgatc
ttcgtgaagtcggtgcagcgctgtgttgctctggcccagctgctggtggagcagaacttt
cctgccatcgctatccacagaggcatgcctcaggaggagaggctggcccgctatcagcag
tttaaggacttccagaggcggattctggtggccaccaacctgttcgggcggggcatggac
atcgagagagtgaacatcgccttcaactacgacatgccggaagactccgacacctactta
cacagggtggctcgagcgggcaggtttggtacgaagggtcttgccatcacctttgtgtcg
gacgagggtgacgctcgcacgctcaacgatgttcaggatcgatttgaggtcaacatcagc
gagctgccggaggagatcgacatctcgtcctacattgaacagtcccgataa
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