Anguilla rostrata (American eel): 135262324
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Entry
135262324 CDS
T10705
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04382
Cornified envelope formation
arot04510
Focal adhesion
arot04512
ECM-receptor interaction
arot04518
Integrin signaling
arot04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135262324
04518 Integrin signaling
135262324
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135262324
09142 Cell motility
04820 Cytoskeleton in muscle cells
135262324
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135262324
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arot04147
]
135262324
00536 Glycosaminoglycan binding proteins [BR:
arot00536
]
135262324
Exosome [BR:
arot04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135262324
Glycosaminoglycan binding proteins [BR:
arot00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135262324
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135262324
NCBI-ProteinID:
XP_064205364
LinkDB
All DBs
Position
9
Genome browser
AA seq
1698 aa
AA seq
DB search
MKFGIFVFVVVLAVETTYGQQIPCVGINCVEGCDCNPEKGSRGRPGPVGSIGPAGQEGFI
GPQGPPGPKGERGNAGLKGPAGPKGDKGPMGVPGFPGIAGVPGTPGQEGGRGPPGLDGCD
GFDGISGDPGARSPNGQPGVAGFRGIPGPKGQKGEPVYTGPGYIPRGNPGLPGLDGLIGP
RGFPGSPGQAGQRGPDGRPGAPGLPGPPGPTGGSGVGFKGEHGDRGDVGPPGPRGVQAEE
TLLYSPVSLYFKGERGDPGFRGQPGQPGRPGIPGSYGYGSETGETGIPGLPGGRGAPGLD
GTPGHPGVKGLPGDPGYAGRPGYPGPKGSQGDTGPPGPPSYGGYGQGAGAPGPRGDPGIP
GAPGAPGDQGPLGYPGQPGPPGLPSYYSGQVLTGFPGTPGPKGEKGEPGRPAYGSPGVPG
SDGSPGFPGPPGPPGLSSFPGRAVLPAIPGPQGQPGPRGPPGGSGYQGAKGELGDCRCNG
AAGIGVPGNRGPPGVAGTPGFFGRKGERGDTGYQGPAGSPGPSGGPGSQGYLGRKGEKGD
SFASSARGVKGERGNPGPRGPPGQPGRSGRDGVPGIPGAQGVSGDSSYGVAGDRGYPGIP
GGKGQPGLAGEPGIGYAGSVGIRGPPGDPGYTGAPGTPGRTGEPGGWRCGEEGVIATSFT
EGGDILPCQYPGEQGDPGPPGYPGAPGPKGAPGFPGAVGRPGFNGPKGERGDYGHGGLPG
PPGFPGPKGESGGSGQPGGGGQPGGRGKDGLPGLNGQKGERGEVYGAVDGKPGLPGLNGE
PGDKGPSGTPGQPGAPGEEGRSGYPGAKGERGVDGIPGLPGLVGAPGEGSGVGLPGAVGA
AGPKGISGSPGYPGAKGERGDNGFPGPSGIKGRRGEPGTPGNPGGLGPPGPPGGSREGIP
GGPGRKGERGFPGPRGFPGLGGPPGYAGAPGSKGAPGTPGRDGIPGGPGAPGAKGDVGSP
GFPGLPSVPGRVSTLAKGDPGDPGFNGPPGYPGPRGDKGYPGSPGRRGLPGLPGSAFTRK
GEPGNPGYPGTTASPGYPGPKGAPGGSGFAGSPGPKGDNGSPGAPGFPGGAGAPGQKGAR
GDSFGYPGGPGSKGVAGDPGYSGRPGGVGFPGDAGRPGGPGYGGQKGERGDSGRPGGPGS
PGYPGSKGLPGFPGRSGLSGGPGSPGAPGGSGERGAPGFPGLNGLNGLGGPKGLPGTPGV
SGAGRPGSPGPNGLKGERGGSISGGPGYPGAKGERGVSGGAGHPGLPGATGPRGYSYESD
TPGPPGDAGPPGYDGGPGPQGPPGPQGPAGPGSFPGDPGDQGSPGYPGKAGEPGDAGLPG
SPGQPGGAGFKGERGDTGYTGSPGQAGPPGDPGYGGGRGPKGSRGPPGLRGRPGETRPLV
VLPTPHGEQGSPGYPGSPGEMGPSGPPGGPGRPGAKGERGAAGKLGPNGGAGGPGPLGDH
GPPGFSGRPGDQGQPGKPGPPGPPGFTGRAPSIGYTLVKHSQSTLVPACPQGMVQLWDGY
SLLYVEGQEKAHNQDLGLAGSCLPRFSTMPFLYCNADEVCYFASRNDKSYWLSTTAPIPM
MPVADQQIAQYISRCSVCEAPSPAVAVHSQDLTIPPCPYGWRSLWIGYSFLMHTVAGAEG
GGQSLVSPGSCLEDFRATPFIECNGARGTCHYFATKHSFWLTTVDAGREFLGVPHSETLK
PGQQLSRVSRCQVCMKNI
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcggaattttcgtgttcgttgttgtcttggcagttgaaactacgtatgggcag
cagataccatgtgtgggaattaactgcgttgagggctgcgactgtaaccctgagaagggc
agcaggggtcggccagggcctgtggggtcaattgggccagctggacaggaagggtttata
ggaccccagggccccccaggtcccaaaggtgaaaggggcaacgctggactgaaaggacca
gctgggccaaaaggggacaagggccctatgggcgtgcccggattcccagggattgctggt
gttccgggcacgccaggccaggagggtggcaggggtccacccgggctggatggctgcgac
ggatttgacggcatatctggcgacccgggcgccaggtctccaaacggccagccgggcgtc
gcaggtttccggggaatacctggacccaaaggtcagaagggcgagcctgtgtacactgga
ccgggctacatccccaggggaaatcctggtctgcctggattggacggtctgattggtccc
agagggttccctggaagcccgggtcaggctggtcagagaggccctgatggaaggcctggt
gcccctggtcttcccggtcctcccggtccaacagggggttccggtgtaggtttcaaagga
gaacatggagacaggggggatgtgggtccacccgggcccaggggggtgcaggctgaagag
actcttttgtactcacctgttagcttatacttcaaaggagaaaggggtgacccgggcttt
aggggccaaccaggtcagccaggaaggcccggtattccgggtagctacggttacgggagt
gaaacgggcgagaccgggattcctggacttccaggcgggcggggtgcccctggtttagat
ggaaccccgggacatcccggtgtaaaggggttacctggtgatcctggatacgctggaaga
ccaggataccctgggccaaaggggagtcaaggagacacaggcccccctgggccccccagc
tatggcgggtatggtcagggagcaggtgcaccaggtccccgtggagacccaggaattcct
ggtgctcctggtgcacctggtgaccagggaccattggggtacccagggcagcctggaccc
ccagggctcccctcttactactcaggtcaagttcttacaggcttcccaggcaccccgggg
ccaaaaggggagaagggggagccaggtcgcccagcttatggcagtcctggtgttccaggc
agcgatggctctccagggttccctggtcctcctggtcccccagggctatcatctttccct
gggcgtgctgtactgcctgctatacctggtcctcagggccagcccggtcccagagggcca
ccagggggctcaggataccaaggggcaaaaggtgaactgggagactgccgctgtaacgga
gcagcggggattggggtgcccgggaatcggggccctcccggggtcgcggggacacccgga
ttcttcggcaggaagggtgagagaggagacacggggtaccagggaccagctggctcccct
ggtccaagcggaggtccgggctctcagggctatttgggacgaaagggggagaagggagac
tcttttgcctcttcagccaggggtgtgaaaggggaacggggcaaccccggaccacggggg
cctccggggcaaccaggacgatctggtagagacggagtccccggaatcccaggagcacag
ggagtctctggtgacagtagttatggggtggcaggggacagagggtaccctggaatccct
ggtggaaaagggcagccggggttggctggtgagcctggcattgggtatgcaggcagtgtg
ggcatccgtggaccgcctggagatcccggttacactggcgcccctggaactcctggacgc
actggagagccaggtggctggcgctgtggggaggagggggttattgcgacctctttcact
gagggaggagatattctgccgtgtcagtacccaggagagcaaggtgatccaggaccccct
ggctaccccggggctccaggaccaaaaggggcacctggtttccctggagctgtagggaga
cctgggttcaatggcccgaagggcgaaagaggagactatggccatggaggattacctgga
ccaccaggcttcccgggccctaaaggggagtcaggaggttcagggcagcctggtgggggt
ggccagcctgggggccgggggaaagacggcctgccagggctgaacgggcagaagggggaa
cggggcgaggtttacggagctgtggatgggaaaccaggccttccgggtctaaacggagaa
ccaggagacaaggggccatccggaacaccaggccagccaggcgcaccaggcgaggaaggc
cgttcaggctacccgggggcaaagggagagcgtggtgtggatgggatcccaggactccca
ggcctggttggcgcacctggagagggcagcggggtgggattacctggggcagttggagcc
gccggacccaagggcatttctggatctccaggataccccggagccaagggggagcggggt
gacaacggttttccagggccctccggtatcaaaggcagacggggagagccggggacccct
ggaaaccccggaggactgggtccccctggaccgccgggtgggtcaagagaaggcatccct
ggcggacctggaagaaagggtgaacgaggctttcctggaccaaggggattcccaggattg
ggaggacctcccggatatgctggtgctccagggtcaaagggtgctccgggcacccctgga
agggatggtattccaggcggtcccggagcgccgggagctaaaggggatgttgggagtccg
ggttttcctggtttgccgtctgtaccgggcagagtcagtactctggcaaagggtgacccc
ggtgaccctggcttcaacgggcctcccggataccctgggcctcgaggtgataaggggtat
cctggcagccctggtcgtcgggggttaccaggtctacctgggtcagctttcacaaggaag
ggggaacccggaaaccctggctaccccggcaccactgcatctcccggctaccctggaccc
aaaggggcccctggtggctccggctttgctggctctccaggaccaaagggtgacaacgga
agtcctggagcacctgggttcccaggaggggcaggggcgcctggtcaaaaaggtgcgcgt
ggggactcctttggttatcctggaggtcctggcagtaaaggtgttgctggtgaccctgga
tactcaggcagaccagggggtgtggggttcccaggagatgctggcagacccggaggcccg
gggtacggcggtcaaaagggcgagcggggcgactcagggaggccggggggtcccggctcc
cccgggtaccctggcagtaagggtctcccagggtttccaggacggtctgggctgtctggt
ggtcctgggtcccccggagctccgggtggctccggagaaagaggagcgcctggcttcccg
ggcctcaacgggttgaatggacttggagggccaaaggggctgccaggaaccccaggtgtg
tctggggcaggtaggcctggctccccaggacccaatgggctgaagggagagagaggaggc
tcaatttcaggaggtcctggttaccctggtgcaaagggagagagaggagtctcaggtgga
gcaggtcatccggggctgcctggtgccactggtccaagggggtactcctacgaatcggac
accccaggcccccctggagatgcgggtccgccagggtatgacggagggccaggtcctcag
ggccccccaggccctcaaggacctgcaggcccgggcagttttccgggggacccaggagat
cagggatcccctgggtacccagggaaggcaggtgaaccaggtgacgctgggctgccagga
tcccctggacagccaggtggtgcaggattcaaaggagagagaggagacactggatacact
ggttctccaggacaagctgggccacctggggaccctggatacgggggaggcaggggccca
aagggttcacgggggccccctggcctgaggggacggccaggcgagacacgtcccctcgtg
gtattacccacgcctcacggagagcagggttctcctggttatcctggtagccctggtgag
atgggaccctcgggaccgcctggagggccaggtcgaccaggtgcgaaaggcgaaagggga
gccgcaggtaaacttggacccaatgggggggcaggtggcccaggacctcttggagaccac
ggacctcctggcttctctggacgaccaggagatcagggccagcccggtaaaccagggccc
cctggtcccccagggttcactggtagggctccgagcatcggctacaccctggtgaagcac
agccagtccaccctggtgcccgcctgcccccaggggatggtccagctgtgggatgggtac
agtctgctgtacgtggaggggcaagagaaggcccacaaccaggacctgggccttgcgggc
tcctgcctgccccgcttcagcacgatgcccttcctgtactgcaacgccgatgaggtctgc
tacttcgccagtcgcaacgacaaatcctattggctatctacgacggctcccattcccatg
atgccggtggcggatcagcagatcgcgcagtacatcagccgctgctcagtgtgcgaggcg
ccctccccggccgtggccgtccacagccaggacctcaccatcccaccctgcccatacggc
tggaggagcctgtggattggctactccttcctcatgcacacggtggccggagcggaaggc
ggcggccaatccctggtctccccgggatcatgcctggaggacttccgcgccacgcccttc
atcgagtgcaacggtgcccgcggcacctgccactactttgccaccaagcacagcttctgg
ctgacgaccgtggacgcgggccgggaatttctgggcgtcccgcactccgagacactgaaa
ccgggccagcagctgtcccgggttagccgctgccaagtgtgcatgaagaacatatag
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