KEGG   Apteryx rowi (Okarito brown kiwi): 112963278
Entry
112963278         CDS       T07573                                 
Symbol
SYMPK
Name
(RefSeq) symplekin
  KO
K06100  symplekin
Organism
arow  Apteryx rowi (Okarito brown kiwi)
Pathway
arow03015  mRNA surveillance pathway
arow04530  Tight junction
Brite
KEGG Orthology (KO) [BR:arow00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    112963278 (SYMPK)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    112963278 (SYMPK)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:arow03021]
    112963278 (SYMPK)
   03019 Messenger RNA biogenesis [BR:arow03019]
    112963278 (SYMPK)
Transcription machinery [BR:arow03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     112963278 (SYMPK)
Messenger RNA biogenesis [BR:arow03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     112963278 (SYMPK)
    U7-dependent histone pre-mRNA processing factors
     112963278 (SYMPK)
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N Cohesin_HEAT
Other DBs
NCBI-GeneID: 112963278
NCBI-ProteinID: XP_025915980
Ensembl: ENSARWG00000004963
LinkDB
Position
Unknown
AA seq 1070 aa
MAGPSADGPSARMSVASQFFTEEECGGIDGMSTSERVVDLLNQAALISNDSKINILKQVQ
ELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVVGFIEEAWCPPAAPPRAVEGEALTPRA
AAQWMVKSKVISELQEACWEMVSAMASDIILLLDSDNDGIRTHAIKFVEGLIITLSPRMP
DSDVPKRHENDISLERIPKDHPYIKYNVLWEEGKAALEQLLKFMVHPAISSINLTAALGS
LATIARQRPMFMAEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLRHPSSGDFQP
QITTLLVDLGTQQAEIARSMPNPRDVRKRPRDEPDATLKKMKIEPPLGEDDEDKDLEQVA
VPAPKASGQGSAQSDTDITAEFLQPLLTPENVANLVLISMVYLPETMPASFQATYTPVES
AGTEAQIKHLSRLMATQMTAAGLGPGVEQTKHLKEEPKEEKMAKPESVVIKRRLSALSQG
QAISVLGAQGSAANLLEEEAPQTKRRPEPIIPATQPRLAGAGGRKKVFRLGDVIKPLSDM
QMEKLKLGAVKRILRSERAVACSGAAQARVKILASLVTQFEVPLKSEVLAFVLDDIRGRL
DLAFAWLFQEYNAYLSRYPSGSLDHYDECLIGLLSGLQEKPDQKDGIFTKVVLEAPLITE
SALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDLSSHEKDKVRQQALLFI
KRMYEKDQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETIKQCLYLYLA
LLPHNHKLIHELASVYTEAIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLV
TRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPI
VVKEVFNRLLGTQHGEGTSAVSPLNPGELLIALHNIDSSKCDMKSIIKATNLCFAERNVY
TSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIMKQVWKYPKVWE
GFIKCCQRTKPQSFQVVLQLPPPQLAAVFDKCPELREPLLAHVRSFTPHQ
NT seq 3210 nt   +upstreamnt  +downstreamnt
atggcgggccccagcgccgacggccccagcgcccgcatgagcgtggcctcgcagttcttc
accgaggaggagtgcggcggcatcgacggcatgagcacctcggagcgggtcgtggatctc
ctgaaccaagcggccttgatcagcaacgactccaaaatcaacatcctcaagcaggtgcag
gagctgatcatcaacaaggaccccacgctgctggacaacttcttggacgagatcatcgct
ttccaggctgacaagtccatcgaggtgcggaagttcgtggtgggcttcatcgaggaggcc
tggtgccccccggcagcccctccgcgggccgtcgaaggcgaggcgttgacgccccgcgcc
gccgcgcagtggatggtgaagtccaaggtgatcagcgagctgcaggaggcctgctgggag
atggtgtcggccatggccagcgacatcatcctcctcctcgactcggacaacgacggcatc
cgcacgcacgccatcaagttcgtcgaggggctcatcatcaccctgtcgccccgcatgccc
gactcggacgtgcccaagcgccacgagaacgacatcagcctcgagcgcatccccaaggat
cacccctacattaagtacaacgtgctgtgggaggagggcaaggccgccctggagcagctc
ctcaagttcatggtgcacccggccatctccagcatcaacctcacggcggccctgggctcc
ctggccaccatcgcccgccagcggcccatgttcatggcggaggtgatccaggcctacgag
acccttcacgcgaacctgccgcccaccctggccaagtcgcaggtgagcagcgtgcgcaag
aacctcaagctgcacctgctgagcgtcctgcggcacccgtcctcgggcgacttccagccc
cagatcaccaccctcctggtggacctgggcacccagcaggccgagattgcccgcagcatg
cccaaccctcgcgacgtccgcaagcggccccgcgacgagcccgacgccaccctcaagaag
atgaagatcgagccacccctgggcgaggacgacgaggacaaggacctggagcaggtagcg
gtgccggcacccaaagcatccggccagggcagcgcccagtcggacacggacatcacggcc
gagttcctgcagcccctgctgacacccgaaaacgtcgccaacctggtgctcatcagcatg
gtgtacctgcccgagaccatgcccgcctccttccaagccacctacacccccgtggagtcc
gccggcaccgaggcgcagatcaaacacctctcccggctcatggccacgcagatgacggca
gcggggctcggcccgggcgtggagcaaacgaagcacctcaaggaagagccgaaggaggag
aaaatggccaagccggagagcgtggtgatcaaacggcgcctctcggccctgtcccaaggc
caggccatctccgtgctgggcgcccagggctctgccgccaacctgctggaggaggaagcc
ccacagaccaagcggcgccccgaacccatcatccctgctacgcagcccaggctggccggc
gccggcgggcgcaagaaggttttccgcttgggcgacgtgatcaagccgctgagcgacatg
cagatggagaagctgaagctgggcgccgtcaagcgcatcctgcgctcggagcgggccgtg
gcctgcagcggggccgcccaggcccgcgtgaagatcctggcctcgctggtgacgcagttc
gaggtgcccctgaagagcgaggtgttggccttcgtgctcgacgacatccgcggccgcctg
gacctggctttcgcctggcttttccaggagtacaacgcctacctgagccgctacccctcc
ggcagcctcgaccactacgacgagtgcctcatcggcctcctctccggcctgcaggagaaa
ccggaccaaaaggacgggattttcaccaaagtggtgctggaggcgccgctgatcaccgag
agtgccctggaagtcatccggaagtactgcgaggatgagagccgcacctacctgggcatg
tccacgctgcgcgacctgatcttcaagagaccttccaggcagttccagtacctacacgtc
ctcctcgacctcagctcccacgagaaggacaaggttcgccagcaggccttgctcttcatc
aagcgcatgtacgagaaggaccagctgagggaatacgtggagaaattcgccctcaactac
ctgcagctcctggtgcaccccaatccgccgtcggtgctcttcggggctgacaaggacacg
gaggtggccgctccctggacggaggagaccatcaagcagtgcctgtacctctacctggcc
ctgctgccgcacaaccacaagctcatccacgagctggcctccgtgtacaccgaggccatc
gccgacatcaagcgcaccgtcctgcgggtcatcgagcagccgatccgcggcatgggcatg
aactcccccgagctcctgctgctggtggagaactgtcccaagggagccgagacgctggtg
acgcgctgcctccacagcctcacggataaagtgcccccctcgccggagctggtgaaacgc
gtccgcgatctctatcacaagaggctgccggacgtgcggttcctcatccccgtcctcaat
ggcctggagaagaaagaggtgatccaggctctgcccaaactcatcaagctgaaccccatc
gtggtgaaggaagttttcaaccgcctgctgggcacgcagcatggcgagggcacctcggcc
gtgtccccgctgaaccccggcgagctgctcatcgccctgcacaacatcgactcctccaag
tgcgacatgaaatccatcatcaaagccaccaacctctgcttcgccgagaggaacgtctac
acctcggaggtgctggcggtggtgatgcagcagctgatggagcagagcccgctgcccatg
ctgctcatgcgcaccgtcatccagtcgctcaccatgtaccctcgcctcggcggcttcgtc
atgaacatcctctcccgcctcatcatgaagcaggtgtggaagtaccccaaggtgtgggaa
ggcttcatcaagtgctgccagcgcacgaagccgcagtcgttccaggtggtgctgcagctg
ccgccgccgcagctggccgccgtcttcgacaagtgcccggagctgcgcgagcccctgctc
gcccacgtccgctccttcaccccccaccag

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