Apteryx rowi (Okarito brown kiwi): 112964230
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Entry
112964230 CDS
T07573
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
arow
Apteryx rowi (Okarito brown kiwi)
Brite
KEGG Orthology (KO) [BR:
arow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arow03021
]
112964230 (SETX)
Enzymes [BR:
arow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112964230 (SETX)
5.6.2.5 RNA 5'-3' helicase
112964230 (SETX)
Transcription machinery [BR:
arow03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112964230 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
AAA_22
UvrD-helicase
AAA_16
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
112964230
NCBI-ProteinID:
XP_025917809
Ensembl:
ENSARWG00000007272
LinkDB
All DBs
Position
Unknown
AA seq
2839 aa
AA seq
DB search
MSTCRWCTPSGSDTTELLKNYASKWLSQEDLEGSSDDLCYCLECVVEYHRAREKLPSLHE
VLWELETSRLIAHIEKSMKEEVGEDDELFIVDENGETQLSGYVGPDFENNLRVPLLEILK
YPYLLLHEKVSELCVEVLCRMEQGHNSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFKVIELGLFDSPDIYSSSMIEKGKLILLPSHLYDTTNYKNYWL
GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEADDDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRNSFKRTKSEPESDYDDEMVTCSQIVYN
YNTEKPQKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGRDMRVHHSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHYLCSEIRGILNEKIQQCDKVSEFFVLILVSIIELHRNKKCLHLL
WVSSQEWVEAVVRCAKLPAIAFTRCTEKTSGNYPRGSSALSSQASNSVQHACVQLIRSLL
REGYQIGQHALCKQYLDKLNLLLRGNLSLGWQLSIQETQELQMCLKQVIRSIKGRAMNTS
VSIENNANSTTLPTLSIKQEKRMHGDECEMTVHGRDDLCSPFSFTSKGVRDGGCQENLFT
RRNDAWKEECRDACKTSRSFTERHLVDVKKEPDDKAAQEYECPQNSLTTKICGEVQKNMD
SHLVSGNCDKDNWFFNPSFQCSDFKRGGELETRGGELENKCEMEPVTPKCLVAQTCIDSP
EHVHSSDEKESNMSPNSSSKFKIDADRLMNLKQKVLRTDWTSKLSQLVKPPNLQNSCMAV
SASKAEADQPQLCTDSACASKDCYGHQGVNIACENEISVTSQASRSFENKQEKSMNDTFQ
YRLASIKQESKETLLDCSRASKNEPDLQENEDDHFLLSGITNNLMKKRPSEERSSSLLKS
VFKKDLNMQTSDQEQPNLGNLTKDDCKGQILRTFCVDKTSANGHLRSGSEDKGNVSNTAL
RISPLSVKCESSDRLLEFSKYFKKEDNSMGKSDEDFVRVVSGDSNLTDSEVDRDLSKLSL
AAYAKSVNFPIDSSQESSVYHNICDIKRKVKGAVRSSGNVQSNKSPCDADCLDNQIIIIS
DSSDEEKSVPLAEQTKKTNEDKCPEKQPLTSSCISDTEIKKELKTPSSPLSHDECESQYF
EFETEDEVFSVWQDTQMYTMEKIQEYKQDRVSTSVGSSDSDSVLKDYTNEWGYDTDYISD
DTMEKEASAVEKQIDNLSHQKEAGNTEEVSSSALQESISKGIKKDQLENSADKSAVAEDF
IPNTELTEPRASTSNISLASKLAIKKNSVSPQNNLAKSKLVRTIQRSPKRTLLKTAQSEK
LSQSTSKNSQPGRSTPAVVPPKKVRQCPAPTSTAEKLGLKKAPRKAFELSQRSLESLAQL
RSYGKAAGKVGTAQKQKIKLITPQTLSIKNNKKMLACQDLQFLRQTRPKQSVRGKNLAGS
SDSRSKKVSKVDAKSVKQKPKSFGLTSVEGAVENQGGGKMEQTFFPSASERKQIRDVSLE
KEGMQTTHISKIPVFSDSNTKMKENNMVVPPVPVDLDLFSPVAAEDDKPSEGGCVVQSKF
EKTTSKENGCKSNENSDDDDDLFLTQLDPVDMELCSQEENDGEITISSKPVEMEIDAAEN
LQQNKPLSIVKCKHKDCVEKVEKIGEYCSKHSTTNLETDHLFAKPLLPPSKTRKPSTTKV
FSSVSSSRNAAFTKDLEDVKKLPPASKSKVNVVKPVVFRPPNAKAVPAGNQVCKTPSFSN
VPQPCVSSNVLRPQNTQMDNASNISRRPVREEYYSSFLGAQQRDHSIFVKEVLKWTYEMF
ANCSQYGPPDSLLQSVVASVPIKFQGYNDYFNTFFPLMMLNAFETLAQDWLESQRMRERS
YYFHLQNFCADLKRADFIAHIRESDLARQLHPKEDDLIFLVVQERNAFGEESEVVNHLVK
HVGLVTRFSRASGSSARQNEQHPVCHLSVQTQGNLSFFINKQVKCVVVGSLVTTQRTFKG
LLLLSRSPLAKPIINPSYNDFCPRDLHIASESAAYIKEYNEDQKRAINTAYAIVKQHPGL
PKICLIHGPPGTGKSKTIVGLLSRVLRENTRNEKRTQKLNSKIKPNRFLVCAPSNAAVDE
LMKKIIVEFKEKCQNRQDPLGNCGDIRLVRLGAEKSISSEVRGFSLDKQVEHRMKRKLPN
HDQGIQKRKEALDQKLDMLSRQRAMHRCEKRDINQMLDDEIGRLSKERQQLASQLKEVRG
CSQRVQAEIILESDIICCTLSTSGGTLLESAFWRQGLDPFSCVIVDEAGQSCEVETLIPL
IHRCNKLVLVGDPRQLPPTVKSQKAQDYGYDQSLMARLHRHLETQVQQNILRSLPVVQLT
VQYRMHPDICLFPSNYVYGRSLKTDKATEENRCSSEWPFQPYLIFDVGDGQEERDNDSFS
NPQEVKLVMELIKTIKEKRKDLGLRHIGVITPYSAQKKKIQEELDRVFKNNSSGEVDTVD
AFQGREKDCIIVTCVRANSSKGSIGFLASLQRLNVTITRARFSLFILGRLKTLMENKDWN
ELIQDAQRRGAIIKTSDKSYKKDAAKILKLKTTVQTPPCQPPTKAGTKKAPPVQAHSPGG
RRGELTNPREASSPRELSAPAVPAAPQGSRGLQQPQGPQAVDSRRAPVSTPVEAAAQPAD
REKPRDPRLAGRTETKGKDQVSKDSNRSAQGNLGATAQQGPEVSSAVRDRISKTETSKKP
QQTTGQSDVPSTSSYAAQRESDWRASLSKTDSKTHSGGGQSSSSKWSKDKDYRFVTRRAS
DESPESKDSNSAKRRKTFH
NT seq
8520 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgatggtgtacgcctagtggttctgataccactgagctcctgaagaac
tatgcttctaaatggttgtcccaggaagatcttgaaggatccagtgatgatctctgttac
tgcctggagtgtgtggttgaataccacagagcaagggagaaattgccaagcttgcatgag
gtcctgtgggagttggaaacttcccgtctcattgcccacattgagaaatccatgaaagaa
gaagttggagaggatgatgaattgtttatagtggatgagaatggggagacacagctgtct
ggttatgtaggcccggattttgaaaataacttgcgagtgccccttctagaaatactgaaa
tatccctatctgctgctgcatgagaaagtcagtgagctttgtgtagaagtgctctgtaga
atggaacaaggtcacaactcctttcaggtctttgagaaatatccaggaatttatcttttc
ttggtacaccccaatgaagtgattcgtcgatgggccatcctaacggcaaggaacttaggg
aaggttgacagggatgattactatgacttacaggaagtgctgacatgcttgtttaaagtt
attgaattggggctttttgacagtccagacatttatagttcttcaatgattgaaaagggt
aaactcatccttctgccatctcatttatatgatactaccaactacaagaactattggtta
ggtatttgtatgttgctaacagtgctggaagaacaagctatggattccttgctgctgggt
ccagacaaacagaatgatttcatgcagtctatacttcacaccatggagaaagaagcagat
gatgattctactgaccccttctggccagcgctgcattgtttcatggttattttggatcaa
cttggatctaaagtatggggtcagcttattgatcctgtccaagcctttcaaaccattatc
aacagtgtgagctacaacaatgaaataaaaaatatacgcaatagctttaagaggaccaaa
tctgaaccagagtcagactatgatgatgaaatggttacttgcagtcagattgtatataat
tacaatacagaaaagccccaaaaggatactggatggaaaactgccatttgtccagactat
tgccccaacatgtatgaagatatgcaaacgttggctaatgtgcttcagtctgatattggc
agagatatgcgcgtccatcacagcacgtttctgtggttcatcccttttgttcagtcactt
atggacctcaaggacttgggtgtggcatatatagtagaggtcattcactacctctgctca
gaaatcaggggtattcttaatgaaaaaatccagcagtgtgacaaagtctctgaatttttt
gtcctgatcttagtgtcaattattgaactacacagaaataaaaaatgcctgcatttgctg
tgggttagctcacaggaatgggtggaggcagtggtgaggtgtgctaagctcccagccata
gcatttacgcggtgcactgaaaaaacatctggaaactatccgagaggttcctcagcatta
tcttcacaggcttctaactctgtgcaacatgcttgtgtgcagttgatacgcagccttctt
agagaaggttatcaaattgggcagcatgctctttgcaagcaatacctagacaaactcaat
ctccttctgcgtggaaatctatccttaggttggcagctgagcatccaggaaacccaggaa
ttacaaatgtgtttaaagcaggttataagaagtataaagggcagagcaatgaatacctct
gtgtctatagaaaacaatgcgaactctacaactttgcccaccctttctataaagcaagag
aagaggatgcatggtgatgaatgtgaaatgactgtacatggtagagatgacctttgttcg
cctttttcttttacatcaaagggagtcagagatggaggttgtcaggagaaccttttcact
agaagaaatgatgcctggaaagaggaatgcagagacgcatgtaaaacttcaagatctttc
actgaaaggcaccttgtggatgttaaaaaggagcctgatgataaggcagctcaggaatat
gaatgcccacagaactctctgacaacaaaaatatgtggggaagttcagaaaaatatggac
agtcatcttgtgtcagggaactgtgataaggataattggttctttaatccaagttttcag
tgctctgactttaaaagaggtggagagttggaaacaagaggtggagagttggaaaataaa
tgtgaaatggaacccgtaacaccaaagtgtctggttgctcagacttgcattgattctcca
gaacatgttcatagctcagatgagaaggaaagcaacatgtctcctaattcttcctcaaaa
tttaaaatagatgcagatagactcatgaatctgaaacagaaggtgctgagaactgactgg
acctcaaaactatcacagctagtgaagccacccaacttgcaaaacagttgtatggcagta
agtgcttcaaaagcggaagcagaccaacctcagctgtgtactgacagtgcatgtgcaagc
aaagattgctacggacatcaaggagtgaatatagcatgtgaaaatgaaatctctgttact
tctcaggcttcaaggagctttgaaaacaagcaggagaaaagcatgaacgatacttttcaa
tacagattggcctccattaaacaggagtcaaaagagacactgctagattgctctcgcgcc
tctaaaaatgaacctgatttgcaagaaaatgaagatgaccattttttgctttcagggatt
accaacaatttaatgaaaaaaagacccagtgaagaaagatcaagttcattgttgaagtct
gtgtttaagaaagaccttaacatgcaaacttcagaccaggaacagcctaatttaggcaac
ttaactaaagatgactgtaaaggtcaaattttgaggacattctgcgtagataaaacttca
gcaaatggtcatcttcgctctggctctgaagataaggggaatgtatccaacactgctctt
cggatcagtccactctcagtgaagtgtgaatcaagtgacagattgttagaattttcaaag
tatttcaagaaagaagacaattcaatggggaaaagtgatgaggattttgtgagggtggtt
tctggagatagcaatttaacagactccgaggttgatagagatcttagtaaattatcttta
gctgcatatgccaaaagtgtcaattttcccattgattcaagccaagaaagctcagtatat
cataatatatgtgacattaaaaggaaagtgaaaggtgctgtaagatcatctggcaatgtc
cagagtaacaagtcaccctgtgatgcagattgccttgacaatcaaatcattatcatttcg
gactcctctgatgaagaaaagagtgtgcctcttgcggaacaaacaaaaaaaacaaatgaa
gacaagtgtccagaaaaacagcctttaacatccagctgcatttctgatactgagatcaaa
aaagaattgaagacgcctagctctcccttgtcgcacgacgaatgtgagtctcagtacttt
gagtttgaaacagaagatgaggtcttttcggtttggcaagatactcagatgtatactatg
gaaaaaattcaagaatataaacaagatcgtgtttcaacatcagttggtagcagtgactca
gatagtgtactgaaggattacacaaatgaatggggttatgatacagattacataagtgat
gataccatggaaaaagaagcaagtgcggtagaaaagcagatagataatctctctcatcag
aaggaagctggtaatacagaagaggtatctagttcagccttacaagaatctattagtaag
ggaatcaaaaaagatcaactggagaattctgcagacaaaagtgctgttgctgaagacttc
atcccaaacacagaactgactgaacccagagcatctacatctaacatatcgttagcttca
aagttggccattaagaaaaatagcgtgagcccacagaataatttagcaaaatctaagttg
gtaagaactattcaaagaagtcctaaaagaactcttcttaaaactgcacaaagtgaaaaa
ctatctcaaagtacctcaaaaaactctcaacctggcaggtcaacacctgctgtggttcct
ccaaaaaaagttcggcagtgtcctgcaccaacatcaactgcagaaaaacttggtctgaag
aaggcaccccgcaaagcatttgaattgtctcagcgctctttagagagtctggctcaattg
cgtagctatggtaaagctgctgggaaagttggaactgcacagaaacagaagattaaatta
attactcctcagactttgtcaataaaaaataataaaaaaatgctagcctgccaagatctt
cagtttttaaggcagacaaggcccaaacaaagtgtcagagggaaaaatcttgcaggaagt
tctgacagtagaagcaaaaaggttagcaaagtggatgcaaaatctgtgaaacaaaagcct
aaaagttttggcttgacatctgttgaaggagctgttgaaaaccaagggggaggaaaaatg
gagcagaccttttttccctcagccagtgagagaaaacaaatcagagatgtctctctggag
aaggagggtatgcaaactacacacatttctaaaatacctgttttttcagactcaaacaca
aaaatgaaagaaaacaatatggtggttcctcccgtacctgtggatttggatctcttttcc
cctgtagctgctgaagatgataaaccttcagaaggaggttgtgttgtccagtctaagttt
gagaagacaacttcaaaagaaaatggatgtaaatcaaatgaaaacagtgatgatgatgat
gatttatttttaactcagttagatcctgtggatatggaattatgttcccaagaggaaaat
gatggagaaattactatatctagtaaaccagtggaaatggaaatagatgctgctgaaaac
cttcagcagaacaaacccttgagtattgtgaaatgtaagcacaaagactgtgtggaaaaa
gtggaaaaaataggtgagtactgtagtaagcattcaactaccaatttggaaacggatcat
ttgtttgccaaacctttgctgccaccttctaaaacaagaaagccttccactaccaaagtt
ttcagctcagtaagctcttcacggaatgcagccttcaccaaggatcttgaagatgttaaa
aagctaccaccagcttcaaaaagcaaagtaaacgtagtgaaacctgtggtgttcagacca
ccaaatgcaaaggctgtaccagcaggaaatcaagtatgcaagaccccaagtttcagtaat
gttcctcagccctgtgtttccagtaatgttctccggccgcaaaatacacagatggacaat
gcttcaaatatttccagaagacctgtcagagaagaatattattcttcctttcttggggct
cagcagcgtgatcatagtatttttgttaaagaagtcctaaagtggacttatgaaatgttt
gcaaactgcagccaatacggacctccggatagtctcctgcagtctgtagtagcctctgtt
cccatcaaatttcagggatacaatgactattttaatacgtttttccccttgatgatgcta
aatgcctttgaaacactggcacaagactggttagaaagccagagaatgagagagaggagt
tactacttccacttgcaaaacttctgtgctgacttgaaaagagcagattttatagctcac
attcgagaaagtgatttggcaaggcagcttcacccaaaggaggatgatttaatctttttg
gtagtccaagagagaaacgcctttggggaagaaagcgaggtggtgaaccatctagtgaag
cacgtgggtcttgtgacacgattttcgcgtgcatctggcagttcagctagacaaaatgag
cagcatcctgtctgtcatctctctgtgcaaactcaaggcaatttgtcatttttcataaat
aagcaagtgaaatgtgtggtggttggctccctagtaaccacacagcgaacgttcaaaggt
ctgctactactgagcaggagtcccctggctaaacccatcataaacccaagttacaatgac
ttctgtcccagagatttgcacatagcttcagaaagtgctgcttatataaaagaatacaat
gaagatcaaaagagagccatcaatactgcttatgccattgtaaaacagcatccaggactt
cccaagatctgcctcatacatggaccacctggaacagggaaatcaaaaactattgttgga
cttctgtctcgtgttttgagagagaacactaggaatgagaaaagaactcaaaaactaaat
tccaagatcaagccaaaccgttttctagtttgtgcaccatccaatgctgctgttgatgaa
ctcatgaaaaagatcatcgttgaatttaaggaaaaatgccaaaacagacaggatcctttg
ggaaactgcggtgatatcagattagtgcgactgggtgcagaaaaatcgatcagcagtgaa
gtacgtggatttagcctggataagcaagttgaacatagaatgaaacgaaaacttcctaac
catgaccagggtattcagaagagaaaagaagctctagatcaaaagctggacatgctgtct
cgtcaacgtgccatgcatagatgtgagaagagggacataaatcaaatgttagatgatgaa
attggcagactttcaaaggagagacaacagcttgcttctcaactaaaggaggttcgggga
tgctcccagagagtacaggcagaaatcatcttggagtctgacatcatctgctgcacactg
agcacaagtggagggactctgctggaatccgctttttggcggcaaggacttgatccgttc
agctgcgtcattgtggatgaggcaggacagtcctgtgaggttgaaacactcattccactg
attcatcgctgtaataaacttgtccttgttggagatcccagacagctccctcctactgta
aaatcgcagaaagctcaggactatggctatgatcagtccttgatggcacgcctgcacaga
cacctggaaacacaagtgcagcagaatatcttaagaagtctgccagtcgtgcagctgact
gtgcagtacaggatgcaccctgacatctgcctcttcccctccaattacgtttatggcaga
agtctgaagactgacaaagcaacagaagagaacagatgttcttcagaatggccattccag
ccttacctaatttttgatgtaggagatggtcaagaggagagagacaacgactcttttagt
aatccccaggaagttaaactggtgatggaattaattaaaacaattaaagaaaaaaggaag
gatcttggtcttcgtcacattggagtaattaccccttacagtgcacagaaaaagaaaatt
caggaagaactagacagagtgtttaagaacaacagctcaggggaggtggacacagtggat
gcattccaggggcgagagaaagactgcatcatagtgacgtgcgtccgggcgaacagctct
aaagggtcaattgggtttctggcaagtcttcagcgactgaatgttacaattacccgggcg
agattcagcctcttcattcttggaagactaaaaacactcatggaaaataaagactggaat
gagttgattcaggatgctcagagaagaggtgccattatcaagacctcagacaaaagctac
aagaaggatgctgctaagattctgaagctcaagacaacagtacagacccccccctgccag
ccccccaccaaagcagggacaaagaaagctcctccggtgcaggctcattctcctggtggc
aggaggggcgagctcacaaatccgagggaggccagcagtccgcgggaactctctgctcct
gccgtccctgcagcacctcaagggagcagagggctgcagcagccacaggggcctcaggct
gtggactccaggagagcccctgtttccacaccagtggaggctgcagcacagcctgctgat
cgagagaaaccacgggacccaaggctggctggtagaacagagacaaaagggaaggaccag
gtctcaaaagacagcaatcggtcagctcagggcaatctgggagcaacagcacagcagggc
ccagaagtatcctcagctgtcagggatcggatttccaaaacagaaacttctaagaagccc
caacagacaacgggacaatcagacgtgccttccacgtcatcttatgcagctcagcgagag
agtgactggagagcttctttatcaaaaaccgattcaaaaacccatagtggaggaggtcaa
agtagtagcagtaagtggagcaaagacaaagactatcgttttgtaaccaggagagcatca
gatgaatcaccagagagcaaagactcaaacagtgccaagcgaagaaagacctttcactga
DBGET
integrated database retrieval system
