Apteryx rowi (Okarito brown kiwi): 112964286
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Entry
112964286 CDS
T07573
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
arow
Apteryx rowi (Okarito brown kiwi)
Pathway
arow04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arow00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112964286 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
arow00536
]
112964286 (COL5A1)
Glycosaminoglycan binding proteins [BR:
arow00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112964286 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
112964286
NCBI-ProteinID:
XP_025917947
LinkDB
All DBs
Position
Unknown
AA seq
1838 aa
AA seq
DB search
MDTHTRWKRRSWIRSWPVPAALLLLGAASLGGAAEPADLLKVLDFHNLPDGITKTTGFCT
SRRSSKEADVAYRVTKDAQLSAPTKQLYPASPFPEDFSILTTVKAKKGGQSFLISIYNEQ
GIQQIGVEMGRSPVFLYEDHTGKPGPEDYPLFRGINLADGKWHRVAISVQKKNVTLILDC
KKKITKFLDRSDHPIIDVNGIIVFGTRILDEEVFEGDIQQLLIVADPRAAHDYCEHYSPD
CDTAIPDSPQSQDPNQDEYYTDGEGESDTYYYEYPYYEDVDEAVKPEAPTTKPGTTEAAT
GEGPETKQDYPAPTQSPDAVDPGKETKEDHAVDDPLVDEYNYETINEEYFTPLPYEDINY
NEELDPQGGGLTENAVEAEVPTSTVITYNETDAGPGGEDLDKDFTEETIKEYDGNYYDSY
YDRTVSPDIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLVEGPPGPEGPAGLPG
PPGPTGPVGVMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFSGGGDAGSKGPLVSA
QEAQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEAGDMGPQGPRGIQGPPG
PTGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGNRGEPGPHGPPGAPGEDG
ERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVAGMDGQTGPKGNVGPQGEPGPPG
QQGNPGAQGLPGPQGPIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGSQGPSG
PQGPIGYPGPRGVKGADGVRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDG
PEGPKGRSGPNGDPGPLGPAGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGARG
TPGKPGPRGQRGPTGPRGERGPRGSTGKPGPKGNSGGDGPPGPPGERGPPGPQGPTGFPG
PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPG
PPGEQGLPGLTGKEGTKGDPGPAGLPGKDGPPGLRGFPGERGLPGPIGATGLKGNEGPPG
PPGPAGSPGERGPAGSAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVG
LPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPAGADGEPG
PRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSG
PPGADGPQGPPGGIGNPGAVGEKGEPGESGEPGLPGEVGLPGPKGERGEKGEAGPSGAAG
PPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTG
EPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRG
IPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKG
DRGLPGPQGSAGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGESGLPG
PPGPPGPPGEVIQPLPIQASKRTRRNIDASQLVDDGNADNYMDYADGMEEIFGSLNSLKL
EIEQMKHPLGTQHNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGETC
IFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDSDGNPIGVVQMTFLRLLSASAHQ
NITYNCYQSVAWHDATTDNYDKAIRFLGSNDEEMSYDNNPYIRAAVDGCAARKGYQKTIL
EINTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFLG
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcacacacggtggaaaaggcgaagctggatacggagctggccggtgcccgca
gcgctgctcctgctgggcgccgcgtccctgggcggtgcagctgagcctgcagatctcttg
aaggtattagattttcataatttacctgatggtataacaaaaacaacagggttttgcaca
agcagaagatcttcaaaagaagcagatgttgcttatcgagtaacaaaagatgctcagctt
agtgcaccaacaaagcagctgtatcctgcttccccattcccagaggacttctccattcta
accactgtaaaagcgaagaaaggaggtcagtccttcttgatctcaatttacaatgagcaa
gggatccagcaaattggtgtggagatgggtagatctcctgtattcctgtatgaagaccat
acaggaaagccaggcccagaagactatcctctctttagaggcattaacctagcagatggc
aagtggcacagagtagccatcagtgtgcagaagaaaaatgtcactttaattttggactgt
aaaaagaagataaccaagttcttggaccgaagtgaccaccccatcattgatgtcaatggc
atcattgtatttggaacaaggatactggatgaggaagtctttgagggcgacatccagcag
ctcctgattgtggcggaccccagagcagcccacgattactgcgagcactacagccccgac
tgcgacaccgccatcccagactccccccagtcccaggaccccaaccaggacgaatactac
actgacggggagggagaaagtgatacttattactatgaatacccctactacgaagatgtg
gatgaagctgtaaagccggaagcacccaccaccaaacctggcactactgaagcagctact
ggagagggacctgaaaccaagcaggactaccctgcccccacacagtcacctgatgcagtg
gaccctggcaaggagacgaaggaggatcatgctgtggatgaccccctcgtggatgagtac
aactatgaaaccatcaacgaagagtattttacacctctgccttatgaggatatcaactac
aatgaagaattagatccccagggtggtggactaacggaaaatgctgttgaagctgaagtc
cccactagtacagtcatcacctacaatgagaccgatgctggtccaggaggagaggacctg
gataaagatttcaccgaggaaacaataaaagaatatgatgggaattactatgatagctat
tatgaccggacagtctcccctgatattgggccaggaatgcctgccaaccaggacaccatc
tacgaagggattggtggcccacggggcgagaaaggacagaaaggggagcctgcaattatt
gaaccgggtatgcttgttgaaggcccacctggtcccgaaggcccagcaggcctgccagga
cctccaggaccaactggacctgtgggcgtaatgggtgaccctggggagagaggaccaccg
ggccgcccaggtcttccaggagcagatggtttacccggaccaccagggacaatgcttatg
ttgcctttccgctttagtggaggaggagatgctggctctaaaggacctcttgtttcggcg
caggaggcccaagcccaagccatcctgcagcaggcgaggctggcgctaagaggaccagca
ggcccgatgggtctgacaggacggccaggccctgtgggacccccaggcagcggaggacta
aaaggtgaagcaggagatatgggaccacagggtccgcgaggcatccaaggccctccaggc
ccgacaggaaaaccaggccgcaggggtcgagcaggcagcgatggtgcccggggaatgcca
ggccagacaggaccaaagggtgaccgagggtttgatggcttggctggtttgcctggtgag
aagggaaataggggtgagcctggcccccatggacccccgggagcacccggagaggatggc
gagaggggagatgatggagaagttggacctagaggactgcctggagaacctggaccccga
ggactgctgggaccaaaaggaccaccgggtcctccagggccaccgggtgtggctggtatg
gatggacaaactggtcccaaggggaatgtgggtcctcaaggtgagccaggtcccccagga
caacagggtaatccaggtgctcagggtcttccaggtccacaaggcccaatcggtccccca
ggagagaaagggccgctgggcaaacctggtcttcctggcatgccgggtgcagatggtcct
ccgggtcatcctggcaaagaaggtcctcctggagagaaggggagtcagggtccatcaggt
cctcagggccccattggttacccaggaccacgtggagtcaagggagcagatggtgttcgt
ggactgaaaggtaccaaaggtgaaaagggtgaagatggtttccctggcttcaaaggtgat
atgggcatcaagggagaccggggtgaaattggtcctcctggcccaagaggtgaggatggt
cctgaaggccccaaaggtcgctctggtcccaatggagatcccggtcctcttggtcctgct
ggagaaaagggaaagctcggcgttccaggattaccaggttaccctggaagacaaggccca
aagggttcaatcgggttcccaggatttccaggagccaacggcgagaagggtgcacggggg
acacctggcaaaccaggtccaagggggcagcgcggtccaacgggtccacgtggggaaaga
ggccctaggggaagcactgggaaacctggcccaaagggcaactctggtggtgacggcccc
cctggtcctcctggcgaaaggggaccaccagggcctcaaggaccaactggttttcctgga
ccaaaaggcccccctggtcctcctggaaaggatggattgcctggtcaccccggacagaga
ggagaaactggtttccaaggcaagacaggccctccaggccctcctggtgtcgtaggccct
cagggtccgactggtgagactggcccaatgggtgagcggggacatccaggccctccaggt
ccccctggtgaacaaggtcttcctggcctcactggaaaggaagggaccaagggtgaccct
ggtcctgccggtctcccaggaaaggatggtcccccgggcttgcgaggcttccctggagag
agaggcctccctggcccaattggtgctacgggactgaaaggcaacgaaggtcccccaggc
cccccaggtccagcaggttctcctggcgagcgaggtcctgctggttcagctggcccaata
ggcctgccagggcgacccggcccacaaggacctccgggacctgcaggtgaaaagggagcc
ccaggtgagaaaggtcctcaaggaccagctggtcgggatggcatccagggcccagttgga
ctcccagggccagcaggtcctgttgggccacctggagaagatggagacaagggcgagatt
ggggaacccggccagaagggcagcaagggcgacaaaggggaacagggtccaccaggtccc
acaggaccacagggtccaattggtcagccaggcccagctggtgctgatggagagccaggt
cccagaggacagcaaggcctctttggtcagaaaggtgatgaaggacccagaggtttccct
ggtccccctggcccagtgggcttgcagggcttgcctggaccgcctggtgagaagggagaa
acaggggatgttgggcaaatgggcccaccaggcccacctggacccagaggtccctctgga
ccaccaggagcagatggtccacagggtcctcctgggggaataggaaatcctggcgcagta
ggagagaagggtgaacctggggaatctggtgagcctggtcttcctggggaggttggcctc
ccgggtcctaaaggtgaaagaggtgaaaaaggtgaagcaggtccttcaggtgctgctggt
ccacctggccccaaaggtccaccaggtgatgatggtcccaagggcagccctggtccagtt
ggtttccctggtgaccctggtcctcccggagaacctggtccagctggacaagatggtccc
cctggtgacaaaggtgatgacggcgaacctgggcagactggttcccctggtcccacagga
gagccaggcccctccggaccgccgggaaaaaggggtcctcctggtccagctggtcccgaa
ggaagacaaggagagaaaggagccaagggtgaagctggtttggaaggacctcctgggaag
acgggcccaattggtccccagggtgctccagggaaacccggccccgatggccttcgagga
attcctggtccagttggtgaacaaggtctcccaggttcccctggcccagatggtcctcca
ggcccaatgggcccaccgggtttgcctggtcttaaaggagactctggtcccaaaggtgaa
aagggtcatccaggtttaattggtcttattggaccgccaggtgagcagggagaaaagggt
gacagaggtctcccaggaccccagggctcagcaggccccaaaggagagcagggtatcaca
ggtccttctggaccaatcggacccccagggccaccaggattaccgggtccacctggtccc
aaaggtgctaaaggatcatcaggtccaacaggtccaaagggtgaatcgggtcttcctggg
cccccaggacctcctggtcctcctggagaagtcatccagcccctgcccatccaggcatcc
aagaggaccaggcgaaacatcgatgccagccagctggtggatgatggaaatgccgacaac
tacatggactatgcagatggcatggaggaaattttcggctccctgaattccttgaaactg
gaaattgagcaaatgaagcatccattgggcactcaacataacccagctcgtacctgcaag
gacctgcagctctgtcaccctgatttcccagacggtgaatactgggttgatcctaaccaa
ggatgttccagggactctttcaaagtttactgtaatttcacagctggtggagagacttgc
atcttccctgacaagaaatctgaaggagctagaattacttcttggccaaaggaaaaccca
ggctcctggttcagtgaattcaagcgcggtaaactgctctcctacgtggactcggacggg
aaccccatcggcgtagtgcagatgactttcctgaggctcctgagcgcgtcggcccaccag
aacatcacctacaactgctaccagtctgtagcctggcacgacgccaccaccgacaactac
gacaaggccatccgcttcctgggctccaacgacgaggagatgtcctacgacaacaacccc
tacatccgagccgctgtcgacggctgcgcggcaaggaaaggctatcagaagactatcctg
gaaatcaacacgcccaaagtagagcaagtacctatagttgacatcatgttcaatgacttc
ggagaagcgtcacagaaatttggattcgaggtgggaccagcttgcttcttgggctaa
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integrated database retrieval system
