Apteryx rowi (Okarito brown kiwi): 112964509
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Entry
112964509 CDS
T07573
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
arow
Apteryx rowi (Okarito brown kiwi)
Pathway
arow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112964509 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arow03019
]
112964509 (MTREX)
03041 Spliceosome [BR:
arow03041
]
112964509 (MTREX)
03009 Ribosome biogenesis [BR:
arow03009
]
112964509 (MTREX)
03016 Transfer RNA biogenesis [BR:
arow03016
]
112964509 (MTREX)
Enzymes [BR:
arow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112964509 (MTREX)
Messenger RNA biogenesis [BR:
arow03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112964509 (MTREX)
Spliceosome [BR:
arow03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112964509 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
112964509 (MTREX)
Ribosome biogenesis [BR:
arow03009
]
Eukaryotic type
Pre-60S particles
Helicases
112964509 (MTREX)
Transfer RNA biogenesis [BR:
arow03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112964509 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
112964509
NCBI-ProteinID:
XP_025918495
Ensembl:
ENSARWG00000013272
LinkDB
All DBs
Position
Unknown
AA seq
1071 aa
AA seq
DB search
MADAFGDELFSVFEEDSAAASGAKKSKAGAADGARKPGKRLEEKSSVVAPGKSKREVEVN
STEDAILGKKPKLEDVVSEDINLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPRT
GKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTS
PIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWV
IFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYT
DYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTK
GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAID
CLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGI
NMPARTVLFTSACKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGK
QLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLE
EQYNKIAIPNEENVIIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEDDDF
GWGVVVNFSKKSNVKAYEVTDVSGQMLKSLEYTYLIMQYSAKGGRILSLKHPYPNSGELD
PLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQVVPVLVHLLSAISSVRLYIPKDLR
PIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKVIQKVEAFEHRMYSHPLHN
DPSLETVYKLCERKAQIAMDIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIE
MKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGP
LRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVVYTWANGANFAHICKMTDVFEG
SIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggggacgagctgttcagcgtgttcgaggaggactcggccgccgcc
tccggcgccaagaagagcaaagcgggcgccgccgacggcgctaggaagccggggaaacga
ttagaagaaaaatcttcagtagttgctccaggcaagtccaaaagggaagtagaagtcaac
agtacagaagatgcaattttgggaaagaagccgaaattggaagatgttgtatcagaagac
attaatctggcagacctgatgcctcaggtaaaggtgcaagctgtggaaactgttgaaggc
tgtacacatgaggttgcgcttccagcagatgaagactttacaggcctgaagccaagaact
ggaaaagctgcaaaagaatatccatttattcttgatgcctttcagagagaagctatcctt
tgtgtagataacaaccagtctgtattagtgtcagctcatacatcagctggtaaaactgta
tgtgcagagtatgcaattgccttggctttgagggagaaacaacgtgtgatatttacaagt
ccaattaaggctttgagtaatcagaagtatcgtgagatgtatgaagaatttcaagatgtt
ggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtgatgacaaca
gagattttgagaagtatgctctacagaggttctgaggttatgcgagaagttgcatgggtt
atttttgatgaaatccattacatgagagattcagaacgtggtgtggtctgggaagagaca
attattttgctccctgacaatgttcattatgtgttcctttctgccactattccaaatgcc
cgtcagtttgctgaatggatctgccatcttcacaaacaaccttgccatgtgatttacaca
gactatcgacccactccactgcagcattatatattcccagcaggaggagatggactccat
ctggttgttgatgaaaatggagatttcagagaagataattttaacacagcaatgcaagta
cttagagatgcaggagacttagcaaaaggggaccagaaaggcaggaaaggaggaacaaaa
ggtccttcaaatgtatttaagattgtgaagatgatcatggaaaggaatttccaacctgta
attattttcagcttcagtaaaaaagattgcgaagcctatgcacttcagatgacaaagtta
gatttcaatacagatgaagaaaaaaagatggttgaagaagtattcaataatgcaattgat
tgtctgtcagatgaagacaaaaagcttcctcaagtagagcatgtacttcctcttctgaaa
cgaggaattggtatccaccatggtggcctgcttcctatcttaaaagaaaccatagaaatt
cttttctctgagggcctaataaaggccttatttgcaacggagacttttgctatgggaatt
aatatgccagccaggactgtgctgtttacaagtgcctgcaaatttgatgggaaggatttc
cgatggatatcatcaggtgaatacattcaaatgtcagggcgtgcaggacgccgaggtatg
gatgacagaggaatagtgattcttatggtggatgaaaaaatgagtccgacaattggcaag
cagcttttgaagggttcggctgatcccttgaacagtgcattccacctgacgtacaacatg
gtactgaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaatccttt
tatcagttccaacattacagagctattccaggagttgtagaaaaggtgaataaattggaa
gaacagtacaacaaaatagcaatcccaaatgaagaaaatgtgatcatatactacaaaatt
cgacagcaacttgcaaaactgggtaaagagattgaagaatatgttcacaaaccaaaatac
tgcttgccctttctacagccaggaagactggtaaaggtaaaaaatgaagatgatgacttt
ggatggggagtggttgttaatttctctaagaaatcaaacgttaaggcatatgaagtaaca
gatgtttcagggcaaatgctaaaatccttggaatacacctacctaatcatgcagtattct
gccaaagggggcagaattttatccttgaagcatccatatcctaattctggtgaattggac
ccactatatgtagttgaagtgctactgcactgcagcaaggagagtttgaaaaattctgct
actgaggccgccaagccagccagacctgatgagaaaggagagatgcaggttgttcctgtt
ttggtgcatctcctctcagctatcagcagtgtccgactttacataccaaaagacttgagg
cctattgacaacaggcaaagtgtgctaaaatctatacaagaggtacagaagcgatttcct
gatggagtaccattactagaccctattgatgacatgggcatcaaagatcaaggactgaaa
aaagtcatccaaaaagtagaggcgtttgagcacagaatgtattcacatcctctccacaat
gatcccagtttggaaactgtatacaaactttgtgaaaggaaagcacagattgctatggat
attaaagcagcaaagcgagaactgaaaaaagccagaactgtcttacaaatggatgaactc
aagtgccgtaagcgtgttttgcgaagattggggtttgccacatcttcggatgttattgag
atgaaagggcgagttgcttgtgaaatcagcagtgctgatgaactgctcctgacagaaatg
atgtttaatggtctcttcaatgacttatctgcagaacaggcaactgcactactaagctgt
tttgtgtttcaagagaattccagtgaaatgcccaaattgacagaacagttggcaggaccg
cttcgtcaaatgcaggaatgtgctaaaagaatcgctaaggtctcagctgaagcaaaactg
gaaattgatgaagaaaattacttgaattctttcagacccaacctaatggatgttgtatat
acatgggcaaatggagctaactttgctcacatttgcaaaatgactgatgtctttgaaggt
agcataattcgttgcatgagacggctagaagaactgcttcgacagatgtgccaagctgca
aaagccattggaaatacagagttggaaaataagtttgcagaggggattacaaagatcaag
agagatattgtgtttgctgcaagcctttacctgtaa
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integrated database retrieval system
