Apteryx rowi (Okarito brown kiwi): 112965397
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Entry
112965397 CDS
T07573
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
arow
Apteryx rowi (Okarito brown kiwi)
Brite
KEGG Orthology (KO) [BR:
arow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
arow04131
]
112965397 (VPS13A)
Membrane trafficking [BR:
arow04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
112965397 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
112965397
NCBI-ProteinID:
XP_025920128
Ensembl:
ENSARWG00000004257
LinkDB
All DBs
Position
Unknown
AA seq
3208 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HISQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEARQLLEARQRELQRIEE
AKQKIADQDKVKEEKQDSFVEKLVTQVIKNLQVKISNIHVRYEDDITNRNNPLSFGISLQ
NLSLQTSDKNWNPCLHDETAKLFYKLVRLDNLFAYWNVKSEMFYHGGYDESLVNLKQGVA
CHNVIPEGYDFVFRPISAKAKLLMNPRSDVDFSTPKMDLDVNLQDIAVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPLHNNARTWWKYVIYGILEVNVQPKLQMWSWERIQHHRK
QVKNYKEMYKTKITSKKPNEEILKLLEEFEKALDIFNITLARQQAEVEATKAGLKLYRPG
VKQDDENSGGWFSWIWGWSGEKKDEQKQEVKGSSLEELMTLEEKAKLYAAIGYSETAVDP
TLPKSYETMKLSVKLLSMSISIRENEQTPELVKFALIDLSTVFTQRPXAQAIRFETKISS
LEVTGMSQEKCTPCLLSSRTVYSDNSTSLLSIMFETNPLDEKADQRLRIESQPLEIIYDA
RTVNNLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLDLKINLMASY
IIVPQKGFYDCTSNLLLLDLGSLKMKSKSRSDLSELKVGQSTIEDIMSRAYDSFDIQLSS
IQLLYSKHDENWQEARKLKYSSQHILQPLDVKVEFSRAMVVTDARMPRFKMSGQLPLLSI
QVSDQKLTSILELIDSIPKPESTPATGSPPKISEAAISPVLSAPHLSQGVLPVLDLHSLA
ESESEEEFYDALSSPVEDMPFFEASCGSLKRGNSTRRQKLRKQESRKNMTDFQLRFEVAE
VLIKLCRLTDNIETPVLQLEVVGLGTELKLRTFDMTANAFLREVCLLCPEYMDDNDKPVY
IITTLDNVEDDLLTLEYIKADINGPELKTAYQNVLQKIKVNFSSLDVHLHTETLLNAMNY
LNSLLPKQETKVAEEPVQEKVEEKKDVLKKLTSKKSKYEDVIDLNICADLSCLRVFIREK
KHRISEIHIEGLDSQVIMKKAATEVNAKLKNIIIVDSDEMALYKKALYITGKEVFNFRMI
SYVNATDGIAYTNMDVVDSRIYLTVGCIQVVFVNKFVSSILAFINNFQAAKAAVTEATVQ
AAEKAATGVKELAERSSRLSLDINIKAPVVIVPQSAMSANVLVADLGLITVKNRFIIAKT
KTRYTLPPVIDSMTVKLSELKLYRSYYESGSLQTEVQLLQPLNLEVIVERNLAAAWYSEV
PDIEISGRLKPMNLILSQEDITTILRTLNENIGGSSGAPPPLPEPKDTNSHCSDARSTSQ
HSAGVTVVTSAVVELHSPIKIKTTLKLDFRFDSLTLVLYSPNSKQAAVMDQRDDLLKLAE
FKLVLMSAAVKMLSDGSMNASVKLANCTLDDKRQSIQKATPRMVEMKHGFEKKFMVDISY
KQGRDGTLLDMIVQEIYLCASMEFLLTVADIFLKANAESAAAQRNLKQSLPLKEQAPLQP
VSTMEMNIIVKNPEIVFVADLTRSDAPALVVTTQCEVFIKNSPEKYSMTAAVKEIQMKAC
PFLPEKRKGNIITVLQPCDFFFEMKQSGTNPQFADLTIKSLTIKVSPIIINTVITITSAL
SPTTETTEEEISQIPPDLWNKKDIKNLKMWFLEESNENEDINPTTELVPTGETLKMNIES
VIITLEAGVGHRTVPMLLAKSSFLGEVKNWSTLINLHSRLELEVHYFNEMFGVWEPLLEP
LEIEKTDLFKPWILEIKMKKKAKKALVESDAEEENYKVPEYKTVIHVSSKDQLNITLSKC
GLLMLSNLGTAFAEAASQTSDIFKKDRAPFVIMNSLGLPITVSPSDSFSVINIEFGAKIF
HLKDGENLNMEYVRTKNESDQFTAMTTLSSKRFYIQICPHNHSTVEKIPLTKVGRCLYTV
RHEESGVERSIVCQIDTVEGSKMITIRSPIQIRNHFSIPLNIFEEGRCLGTALPENEFNI
PLSSYRSILSLQPLANENAVDGEYDMCEGITFDEIMKNVDSLLQRKCQSVKSTNYSLVIN
IVPVKDTLTSSLCADDQWDFPYVVHLWPSVLLRNLLPYQITYSVEGNGNKYDTLGDGCSA
QIHNAVLDQTKLDLQLLNYLDQNWKSEYHIKSNLPDISFTTFYCITELDKTELDIAVHVT
YTAGQMVIAIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFLQNNKVQL
MVTDSELSDQFSLDTVGSHGSVKCKSHKKEYQVGVTINNSSFNITRIVTFTPFFMISNRS
KYTLEVSEEGKEKWIPIVLQQWCEKQWERELSGMCIPFWPESDGNKLLVRVENSDLPPKK
INFDKQENCLLLHLDNKLGGIIVDVNLTEHSTVITFSNYHDGAAPFLLINHTKEEIIEYG
QSSLCELEDCLQPNKAVLYTWGDPTGSRKLKWKCGKRTEEITPKEDRMEILSLDSRKMVY
LVSFFEGLQRIVLITEDQNVFKLTYESVKAELAEQEIVLSLQDVGISLVNNYTKQEVSYI
GITSSDVVWETKPKKKSRWRPMSVKQTDKLEQEFKDYSELTPLENKIIELESNVLVCLTP
NGSNMKMQQPNEIPIRRNYLPALKVEYSSSAHQKSFRIQVYRIQIQNQIPGAIFPFVFYP
IKPPKSITLDSAPKPFTDVSIVMRTAGHSQISHIKYFKVLIQEMDLRIDLGFLYAVVEFF
TQTDVPSDQELELFKKDVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGE
DSNKEERKNELIPLQSLNLLLKSIGATLTDVQDVVFKLAFFELNYHFCTTQQLQSAVIRH
YSKQAIKQMYVLILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLK
ALVGGAVGGLAGAASRITGAMAKGVAAITMDEDYQQKRREAMNRQPTGLREGITRGGKGL
VSGFVSGITGIVTKPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKV
ADSSEDVISLRPPRFFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKFRYIAHAMVNSTDL
LMVTKSGVLFVTKGTFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFG
KIINFKTPEDAKWILSKLEEVRENQPKL
NT seq
9627 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcgctggtcgtggacgtcctcaatcgattcctcggcgactacgtggtg
aacctggacagctcccagctcaagctgggcatctggggaggagctgtagcactgaagaat
cttgaaataaaagaaaatgcgctgagtcagctggatgtgccatttaaagttaaagcagga
catattagtcaacttaacctacagattccatggcaaaacctttatactcaacctgttgag
gcagttcttgatggagtttatttgcttatcgtgccgacagccagcataaaatatgatgca
gaaaaagaagccagacagctcttggaagcaaggcaaagagaactgcaaagaatagaggaa
gcaaagcagaaaatagctgaccaagataaagtaaaagaagagaaacaagacagttttgtt
gaaaaattagtcactcaggtcatcaaaaatcttcaggttaaaatttccaacatccatgtt
cgctatgaagacgatatcacaaatcggaataaccccttgtcatttgggatttcacttcag
aatctgagtttacagacctcagataagaactggaatccgtgtttacatgatgaaactgcc
aagttgttctacaagcttgtacgactggataatctttttgcatattggaatgtgaaatct
gagatgttctatcatggcggttatgatgaatctttggttaacttaaaacagggagttgcc
tgccacaatgtgatcccagagggttatgattttgtattccgcccaatttcagctaaagcc
aaactccttatgaatcctcgatcagacgttgacttttcaacaccgaaaatggatttagat
gtaaatttacaggatatagctgttgaattcaataagccgcagtacttcagtgttatggag
ctccttgaatctattgatatgatgacacgaaatctgccatataggaagtacagacctgat
gttccattgcacaacaatgccaggacatggtggaaatatgttatttatggcatccttgaa
gtaaatgttcaacctaagctccaaatgtggtcatgggaacgtattcagcaccataggaaa
caagtgaagaactacaaagagatgtataaaacaaagataacatcaaaaaaacccaatgaa
gaaatcttaaaattgttggaggaatttgaaaaggccttggatattttcaacatcacgcta
gcaaggcaacaagcagaagttgaggcaactaaagctggattaaaactttacagaccagga
gtaaaacaagatgatgaaaattctggtggctggtttagctggatatggggctggtcaggt
gaaaaaaaggacgaacagaaacaagaagtaaagggttcaagtcttgaagagctaatgaca
cttgaagagaaggctaaactttatgcagcaataggatatagcgaaacagctgtggatcca
acacttccaaaatcatatgaaaccatgaagttatctgtgaagttattaagtatgtctata
tcaataagagaaaatgagcaaacacctgagctggtaaaatttgcattaattgatttgagt
acagtatttacccaaagacctrgtgcacaagcaataagatttgaaacaaaaataagttca
cttgaagttacaggcatgtcacaggaaaaatgtacaccctgtctgctgtcttctcgaaca
gtctattcagataatagtacctcactcttgagcataatgtttgagactaatcctttagat
gaaaaagcagatcagaggcttagaatagaatcacagccattggaaataatatatgatgca
aggacagtaaataatttagtggatttcttcaggcctccaaaagatgtacatttggagcag
ttgacctcagcaactctgatgaagcttgaagagtttcgtgagaaaacatcaacaggtttg
ttgtatgttattgaaacccagaaagttcttgacctcaaaattaacctcatggcttcatac
atcattgttccacaaaaaggattctatgactgtacatcaaacttactgcttttggatctt
ggtagtcttaagatgaaaagtaaaagtcgttctgatttatcagaactaaaagtaggacaa
agcactattgaagatataatgtcaagagcttatgacagttttgatatccagctcagcagc
atacagttactctacagcaaacatgatgaaaactggcaagaggctcgcaagctgaaatac
tcatctcaacatatcttgcagcccttggatgtaaaagtggaattcagcagggctatggtt
gtcacagatgcaagaatgcccaggttcaaaatgtctggacagcttcctttactttctatc
caagtatcagaccaaaagttgacaagtatcttggaactaattgacagcattccgaaacca
gaaagtactcctgctacaggttctcccccaaagatatctgaggctgcaatatcccctgtg
ctgtcagcaccacatttatcacaaggtgtgcttcctgttttggatcttcattcacttgct
gagtcagaatccgaagaagaattttatgatgctctaagcagtcctgtggaagacatgcca
ttttttgaagcctcgtgtggttccctcaagcgaggtaacagtacaagacgacaaaaatta
cgtaaacaagaatctaggaagaatatgacagatttccagctaagatttgaagtagctgag
gtcttaattaaattatgtcgtcttactgataatattgagacacctgtgctgcagcttgaa
gttgtagggttaggcactgaactcaaattaagaacatttgacatgactgcaaatgctttc
cttcgtgaagtttgcctactgtgtccagaatatatggatgataatgacaaaccagtttat
atcattactactttggataatgtagaggatgatcttctcactctggaatacataaaggct
gatattaatggaccagaactgaaaactgcctatcagaatgttctacagaaaataaaggtg
aacttttcttctcttgatgttcatttgcataccgaaactctcctaaatgccatgaactat
ctgaacagtctcctaccgaaacaagaaactaaagttgcagaagaaccagtccaggaaaaa
gtagaggagaagaaggatgttcttaagaaattaacatccaaaaaatcgaagtatgaagat
gttatcgacctcaatatctgtgcagatttatcctgtttacgtgtctttattagagagaaa
aaacatagaatatctgaaattcacattgaaggtttggatagccaagtgatcatgaaaaaa
gcagcaacagaagtgaatgcaaaattaaagaacatcattattgtggattctgatgagatg
gcattgtataagaaggctctgtacatcactggaaaagaagtcttcaactttagaatgata
tcctatgtgaacgctacagatggtattgcatatacaaatatggatgttgttgacagtcgt
atttacctaactgttgggtgcattcaagtagtttttgtcaacaagtttgtttcctctatt
ttggcttttataaataactttcaagctgccaaggcagcagttactgaggcaactgttcaa
gcagcagagaaagcagctacaggtgtaaaagaactggcagaacgtagttcccgattgtca
ctagatatcaatattaaagcaccagttgtgatagttccacaatcagcaatgtctgctaat
gtcctggtggctgatcttggtctaatcactgtaaagaaccgattcattattgctaaaaca
aaaacacgatatactctcccgcctgttattgactctatgacagtgaaattgagtgaacta
aagttatacagatcgtactatgagagtggttcattgcaaactgaagtacagctgctgcag
ccactaaatctggaagttattgttgaacgaaatttagctgctgcatggtatagtgaagtt
cctgatattgaaatatctggacgactcaagcctatgaatctgatcctcagtcaggaggac
ataaccacaatattgaggacactaaatgaaaatataggcgggagctctggtgcaccacca
cctttaccagaaccaaaagatacaaatagccattgtagtgatgcacgtagtacttcacag
cactctgcaggtgtgactgttgtgacatcagctgttgtggaattgcattcacctattaaa
attaaaacaacgctaaaactggatttcagatttgactctctgactttggtactgtatagt
ccaaattcaaaacaggctgcagttatggatcaaagagatgatcttttgaagcttgcagaa
tttaaattagttttgatgtcagctgctgtcaaaatgttatcagatggttcaatgaatgct
tcagtcaagttagcaaactgtacattagatgataaaagacagtcaatccagaaggctaca
ccaaggatggtggaaatgaaacatgggtttgaaaagaaatttatggtggatataagctat
aagcaggggagagatggcactcttcttgacatgattgttcaagagatatacctatgtgca
agcatggaatttctacttactgttgcagatatattcctaaaggctaatgcagaaagtgct
gctgcacagagaaatctcaaacaatctttacctttaaaggaacaagcacctttgcagcct
gtgtctacaatggaaatgaatattattgttaaaaatccagagattgtgtttgtggccgat
ttaacgagaagtgatgctcctgcattggtggttacaactcagtgtgaggtcttcattaaa
aatagccctgaaaagtatagcatgacagctgctgttaaagagatacaaatgaaagcatgc
ccttttctcccagaaaaaagaaaagggaacattattacggtattacagccttgtgatttc
ttctttgaaatgaagcagtcgggtactaatccgcagtttgctgatctaacgattaaatct
ctaacaataaaagtttcaccaataatcataaatacagtgattaccattacatcagccctt
tctccaactacagaaacgacagaggaagagatcagtcaaattcctccagacttgtggaat
aagaaagatataaaaaatctaaaaatgtggtttcttgaagaatcaaatgaaaacgaagat
ataaatccaaccactgaactggttcccacaggagagacattgaaaatgaatattgaatcg
gtcattataacacttgaagctggggttggtcaccgaactgtaccaatgctcttagcaaag
tcatcatttctgggagaagtaaaaaactggagtactcttatcaacctacattctcggctt
gagctagaggtacactattttaatgagatgtttggggtgtgggaacctttacttgaacca
ctagaaattgagaagactgatttattcaaaccatggattcttgaaatcaagatgaaaaag
aaggctaaaaaagcattagttgaatcagatgcagaagaagagaactacaaagtcccagaa
tataaaacagtaatacatgtttcctcaaaagaccagctgaatattacactatccaaatgt
gggctactaatgttgagtaacttaggcacggcatttgctgaagcagctagccaaacttca
gacatcttcaaaaaagacagagcaccttttgtaataatgaattctttaggacttcctatc
actgtctcacctagtgattcctttagtgtcattaacattgaatttggagcaaaaatattt
catttaaaagatggagaaaatttaaacatggaatatgtcagaactaaaaacgagagtgac
caattcacagcaatgacaactctgagtagcaaaaggttttacattcaaatttgtccacat
aatcattctactgtggaaaagattccattgacaaaagtaggccgatgtctttacactgta
agacacgaggaatcgggtgttgaaaggtccattgtctgccaaattgatactgttgaagga
agcaagatgataactatacgttctccgatccagataaggaatcacttttcaattccatta
aatatttttgaggaaggaagatgtttaggaactgctttaccagaaaatgaattcaacata
cccttgtcctcttacagatccatactgagtttgcaacccctagccaatgaaaatgcagtg
gatggagaatatgatatgtgtgaaggaattacatttgatgaaattatgaaaaatgttgac
agcttattgcagaggaaatgccagtcagtgaagtcaactaactactcacttgtcatcaat
attgtcccagtaaaggacacattgacatcttcattatgtgcggatgaccagtgggatttt
ccatatgttgtgcatttatggccttctgttcttctccgcaatcttcttccatatcaaata
acttattctgttgagggaaatgggaacaaatatgacactttaggagatggttgctcagcc
cagattcacaatgcagtcttggatcaaacaaagctagatttacagttgcttaactatctt
gatcaaaattggaaaagtgagtaccatataaaaagtaatctaccagatatcagcttcaca
acattttactgcatcaccgagttggataagactgaattggatattgctgtccacgtgacc
tacacagctgggcagatggtcatagcaattcacagtccatattggatggtaaataaaact
ggtcgaatgttgcagtacaaagctgatggtattcatcgcaagcatcctccggattacaaa
aagccrctgcttttttctttccagcccaaaaacttcctccaaaacaacaaggtgcagctt
atggtaactgacagtgaactgtctgatcagttttcattggacactgttggaagtcatggt
tctgtgaaatgcaagagtcataaaaaggagtatcaagttggagtcaccataaacaacagc
agctttaatattactagaattgtaactttcactccattttttatgatctcaaatagaagc
aaatacactttggaagtgtctgaagaaggcaaggaaaagtggattcctattgttttgcaa
cagtggtgtgagaaacaatgggagagggaacttagtggcatgtgcattcctttttggcct
gaaagtgatggcaacaaattacttgttagagttgaaaattctgatcttcccccaaagaag
ataaattttgataagcaagaaaactgtctcttactgcatctggacaacaagcttggagga
attatagtggatgttaacctgactgagcattctacggtaattaccttttctaattaccat
gatggtgcagctccatttctgttaattaaccatactaaagaagaaattattgagtatgga
cagagctccctctgtgagttggaagactgtcttcagccaaataaggctgtgttgtatact
tggggtgacccaacagggtctagaaaattgaaatggaagtgtggaaagagaactgaggaa
attacaccaaaggaagacagaatggaaatactcagcttggacagtagaaagatggtctat
ttagtgtcattttttgaaggtttacagcgtattgtcctaatcactgaagatcagaatgta
tttaaactgacgtatgaaagtgtaaaagcagaactagcagaacaagaaattgttctgtct
ttacaagatgttggaatttcattggttaataattacacaaaacaggaggtgtcctacatt
ggaattacaagttctgatgtggtttgggagacaaaacccaagaagaagtcaagatggaga
cctatgagtgttaagcaaacggataagttagaacaagaatttaaagattacagtgagctt
actcctttggaaaacaagattattgagttggaatcaaatgttttggtgtgtttaactcct
aatggaagtaacatgaaaatgcaacagccaaatgagattcctatcagaagaaattatctg
ccagctttaaaagtagaatacagttcatctgcacatcagaagtctttcagaattcaagtt
tacaggatacagatacaaaaccagattcctggagccatatttccctttgtgttctatcct
attaaacctccaaagtccatcaccctggattcagcaccaaaaccatttactgatgtcagt
attgttatgagaactgcaggacattcacaaatatctcacattaagtactttaaggtactg
attcaggagatggatctcagaatagaccttggattcctgtatgcagtggttgaattcttt
acacagactgatgtgcccagtgaccaagagctggaacttttcaaaaaggatgtagaatct
cttcaagaagaactgatgagtgtatcatcaatggatacatcacaaatcagcttgtatgaa
tactttcatatctctccaataaagttacacttaagcttttcacttagtacgggtggagaa
gatagtaacaaagaagaaagaaagaatgaattgataccgcttcaatccttgaatctgctg
ctgaagagtataggtgctacactcacggatgtacaagatgttgtctttaagttggcattc
tttgaactcaactatcacttctgtactacacaacaattgcaatcagcagttataaggcat
tattcaaaacaggctattaaacaaatgtacgttcttattcttggccttgatgttttgggt
aatccatttggattcataagaggcctatctgaaggagtagaagcattcttctatgaacct
tatcagggagccatccagggtcctgaagaatttatagaaggaatggcattaggacttaaa
gcactagtagggggagctgttggtggattagctggtgctgcttcgagaatcactggtgct
atggcaaaaggagtagctgcaataactatggatgaggattaccagcagaaaaggagagaa
gccatgaatagacagcccactggtctaagagagggtatcactcgtggaggaaaaggatta
gtttctggttttgtcagtggtataacaggaatagttacaaaaccaataagaggagcccag
aaagaaggagcagctggctttttcaaaggtgttggaaaaggtttagtgggagcagtagct
aggcctactggaggaatcatagacatggcaagcagcacatttcagggcattaaaaaagtt
gcagattcatcagaagatgtgataagcctgcgaccacctcgcttctttggtgaagatgga
gttattagaccttacagattaagagatggaaccggaagtcaaatgttacagaaaattgaa
aatggaagatttgcaaaattcagatacattgcacatgccatggtcaacagtacagatttg
ttaatggtaacaaaaagtggcgtgttatttgtgacaaaaggcacatttggacagctgaca
tgtgaatggcagtacacttatgatgaatttaccaaagagccattcattgttgatggcaga
agattacgcattgaagccaaggaacgagttaagtctgtgttccatgccaaagaatttgga
aaaattattaattttaaaactccagaggatgctaagtggatcctttctaaactggaagaa
gtgagagagaatcagccaaaactgtaa
DBGET
integrated database retrieval system
