Apteryx rowi (Okarito brown kiwi): 112965494
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Entry
112965494 CDS
T07573
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated isoform X1
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
arow
Apteryx rowi (Okarito brown kiwi)
Pathway
arow03018
RNA degradation
arow03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arow00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112965494 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
112965494 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arow03019
]
112965494 (LSM8)
03041 Spliceosome [BR:
arow03041
]
112965494 (LSM8)
Messenger RNA biogenesis [BR:
arow03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112965494 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
112965494 (LSM8)
Spliceosome [BR:
arow03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112965494 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
NCAB1
Motif
Other DBs
NCBI-GeneID:
112965494
NCBI-ProteinID:
XP_025920286
LinkDB
All DBs
Position
Unknown
AA seq
109 aa
AA seq
DB search
MAVSESCSGSVSDVSEHFLNELSGTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFS
SSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
330 nt
NT seq
+upstream
nt +downstream
nt
atggctgtttcagaaagttgtagtggttctgtttcagatgtctcagaacatttccttaat
gaactgtcaggtactgttgcagtaattacttccgatggaagaatgattgtgggaactctc
aaaggttttgatcagaccattaatttgattttggatgaaagccatgaacgagtgttcagt
tcttcacaaggagttgaacaggttgtactgggattatacattgtaagaggtgataacgtt
gctgtcattggtgaaattgatgaagagacagattcagctcttgacttggggaatattcgc
gcagaacctttgaactcggttgtgcattaa
DBGET
integrated database retrieval system
