Apteryx rowi (Okarito brown kiwi): 112965674
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Entry
112965674 CDS
T07573
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
arow
Apteryx rowi (Okarito brown kiwi)
Pathway
arow03013
Nucleocytoplasmic transport
arow03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arow00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112965674 (UPF1)
03015 mRNA surveillance pathway
112965674 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arow03019
]
112965674 (UPF1)
Enzymes [BR:
arow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112965674 (UPF1)
5.6.2.5 RNA 5'-3' helicase
112965674 (UPF1)
Messenger RNA biogenesis [BR:
arow03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112965674 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
112965674 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
112965674
NCBI-ProteinID:
XP_025920668
Ensembl:
ENSARWG00000015605
LinkDB
All DBs
Position
Unknown
AA seq
1050 aa
AA seq
DB search
LNTDFVFQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGI
HDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGC
RNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSE
QEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGP
LVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKG
DLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALK
TFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLS
LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKS
REAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLM
NADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGP
VVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAA
DRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPD
QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQ
GIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRE
SLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGM
ISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFAIP
GTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFK
SQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
ttaaacactgactttgtgtttcaggttaatggacctgatggcattctgcagaatggagct
gtggatgataatgtagctaaaaccagtcagcttctggcagagctgaattttgaagaagat
gaggaagatacctattacacaaaggaccttcctgtgcatgcttgcagctactgtggtatc
catgacccagcctgtgtggtttactgcaacaccagcaaaaaatggttctgtaatggtcgt
ggaaatacatctggcagccacattgttaatcatcttgtgagagcgaagtgcaaagaggtg
actctccacaaagatgggcctctgggagagactgtcttggagtgttataactgtggatgt
cgtaatgtgtttctcctgggctttattccagcgaaggcagactctgtggtggttttgctg
tgcaggcaaccatgtgccagtcagagcagtttaaaggatattaactgggacagttcacag
tggcagcctcttatccaagaccgctgtttcctttcatggctggtaaagattccatctgaa
caggaacagctgagagcacgtcagattacagctcaacagattaacaaactggaagaactt
tggaaggaaaatccatctgcaacccttgaggatttagaaaagcctggtgttgatgaagaa
ccacagcacgtcctacttagatatgaagatgcttatcaataccaaaatatatttggtcct
ctagtcaagcttgaggcagactatgacaagaaactcaaggagtctcagacccaagataac
atcacagtcagatgggacttgggcttgaacaagaaaagaattgcttatttcactttgccg
aagactgattcagacatgcgtcttatgcaaggagatgagatctgcttgaggtataaagga
gacctggcccctttatggaagggaattggtcatgttatcaaagttcctgataattatggt
gatgagatagccatcgagctaagaagcagcgttggagcacctgtggaagttactcataac
ttccaagtggattttgtatggaagtctacttcatttgacagaatgcaaagtgctttaaaa
acatttgctgtggatgagacttcagtgtctgggtacatctatcacaagctgttaggccat
gaggtagaagatgtaattattaaatgccagttgccaaagcgctttacagcacaaggactt
cctgatctcaaccattctcaggtttatgctgtgaagactgtmttgcagcgtcctctgagt
cttattcagggtccccctggtacaggaaaaacagtgacatcggccacaattgtctatcat
ctggctagacagggcaatgggcctgtgttagtctgtgctccgagtaacatagctgtagat
cagttgactgagaagattcatcaaactggactgaaagtggttcgcctgtgtgctaaaagt
cgtgaggcaattgactctcctgtatccttcttggcattgcacaaccagatcagaaacatg
gatagcatgccagagcttcagaaactgcagcagcttaaagatgaaactggagaactgtcg
tctgctgatgagaaacgttaccgtgcactgaagcgaacagcagagcgtgaattacttatg
aatgcagatgtgatctgttgcacatgtgtgggagctggcgatccaagacttgcaaaaatg
cagttccgctccattctgattgatgaaagcacacaggctactgagccagaatgtatggtg
ccagttgtcctgggagcaaaacagctaattcttgtaggtgatcactgtcagcttggtcct
gttgtgatgtgtaagaaagctgcgaaggctggcctgtctcagtccctctttgagaggctt
gtggtgctggggatccgtccgattcgccttcaagtgcagtatcgcatgcatcctgcactt
agtgcttttccatccaatatcttctatgagggttcactccagaatggtgttactgcagcg
gaccgtgtgaaaaaaggatttgatttccaatggccacagccagataagccaatgtttttc
tatgttacacaaggacaggaagaaattgccagttcaggcacctcttacttaaacaggacg
gaagcagccaatgtggagaagataactacaaagttattgaaagctggtgccaaaccagat
cagattggcattatcactccttatgagggtcaacgatcctatctggtgcagtacatgcaa
ttcagtggttccttgcatacgaaactttaccaggaagtggaaattgcgagtgtggatgcc
ttccagggacgagagaaggactttattatcctttcttgtgtaagggccaacgaacaccaa
ggaataggatttctgaatgaccccaggcgtcttaatgtggctcttacaagagcaaggtat
ggagtaattattgttgggaacccaaaagcactgtctaaacaaccactttggaatcacctg
ctgaattattacaaggagcagaaggttctggtggagggaccactgaataacctccgggaa
agtcttatgcaattcagcaagccccggaaacttgtcaataccatcaatccaggtgcccgt
tttatgactactgccatgtatgatgcgcgtgaggctattattccaggatctgtctatgac
cggagcagtcaagggcgcccgtccaacatgtacttccaaacccatgaccagatcgggatg
attagtgccggccccagccatgtcactgctatgaacattcctatccctttcaacctcgtg
atgccaccgatgccaccaccgggatacttcggccaggctaatggaccagctgcaggacgt
ggggcaccaaaaggaaagactggtcgtggtgggcgtcagaaaaaccgttttgcgattcct
ggaactagtcagtcaaaccttccaaatagtcaagcaagccaagacgtggtgtcccagcct
ttctcccagggtccactgactcaagggtatatctccatgagtcagccatcacagatgagt
cagcctgggctctcccaaccagaattatcacaggacagttaccttggtgatgagtttaaa
tctcagatcgatgtggcgctgtcacaggactctacttaccagggtgaacgtgcatatcaa
catggcggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
