KEGG   Apteryx rowi (Okarito brown kiwi): 112975026
Entry
112975026         CDS       T07573                                 
Symbol
COP1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
arow  Apteryx rowi (Okarito brown kiwi)
Pathway
arow04115  p53 signaling pathway
arow04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:arow00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    112975026 (COP1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    112975026 (COP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:arow04121]
    112975026 (COP1)
Enzymes [BR:arow01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     112975026 (COP1)
Ubiquitin system [BR:arow04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    112975026 (COP1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     112975026 (COP1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_EIPR1 WDR55 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd EIF3I zf-C3HC4_2 Beta-prop_WDR19_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_DCAF4 zf-C3HC4 Beta-prop_WDR90_POC16_2nd zf-RING_2 Beta-prop_Aladin WD40_RFWD3 zf-RING_5 zf-RING_UBOX WD40_like Beta-prop_WDR35_TULP_N zf-rbx1 Beta-prop_Vps41 zf-C3HC4_3 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st zf-C3HC4_4 Beta-prop_WDR41 zf-RING_4 WDR90_beta-prop_4th zf_C2H2_10 RING_XB3-XBAT31 zf-RING_10 Prok-RING_4 TRAF3_RING DZR
Other DBs
NCBI-GeneID: 112975026
NCBI-ProteinID: XP_025940412
Ensembl: ENSARWG00000003546
LinkDB
Position
Unknown
AA seq 590 aa
MIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRSE
EKRFKLDHSVSSTNGHRWQIIQDLLGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQL
QILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPS
HSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMTRVSD
DSRTTSQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV
TKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF
TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCV
KFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQ
LKLWNVGKPHCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFD
TVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 1773 nt   +upstreamnt  +downstreamnt
atgattgaagaagcctacatgacaaaatgtggacacagcttctgctataaatgcattcat
cagagtttggaagacaataacagatgtcccaaatgtaactacgtggtggacaacatagat
catctttaccccaacttcttagtcaatgaacttattcttaaacagaagcaaagatctgag
gagaaaagattcaaactggaccattcagtgagtagcaccaatggccataggtggcagatt
atccaagacttgttgggaactgatcaagacaatcttgacttggccaatgtcaacctgatg
ctggagctgctggtgcaaaagaagaagcagttggaagcagagtcccatgctgcgcagttg
cagatccttatggagtttctcaaagttgccagaagaaataaacgagagcaattggagcag
atccagaaggagctaagtgtgctggaagaggatattaagcgagtagaggagatgagtggc
ttgtactccccggtcagtgaggacagtacggtgccccagtttgaagctccctcaccttcg
cacagtagtattattgattccacggagtacagccagcctccaggcttcagtggcagttct
cagaccaaaaaacaaccatggtataatagcacgctagcctcaagacggaagaggctcaca
gctcattttgaggacctagagcagtgctatttctccacaaggatgacacgtgtctcagat
gacagcagaaccacaagccaactggatgaatttcaggagtgtctatccaagttcacgcgc
tacaactctgtccgacccctggcaacactgtcttacgctagtgacctctacaatggttcc
agcatagtatccagtattgagttcgaccgagactgtgactactttgccattgctggggtg
acaaagaagattaaagtctatgagtatggtacagtcattcaggatgcggtggatattcac
taccctgagaatgaaatgacctgtaattccaaaatcagctgtatcagctggagtagttac
cacaagaacctgttggccagcagtgactatgaaggcactgtcatcctgtgggatgggttc
acgggacaaagatccaaggtctaccaggagcatgagaaaaggtgctggagtgttgacttt
aacttgatggaccctaagctattggcctcaggctctgatgatgcaaaagtgaagctgtgg
tctaccaacttggacaactcagtagcaagcatcgaggccaaggctaacgtgtgttgtgtc
aaattcagcccctcttctaggtatcacctagcttttggctgtgcagatcactgtgttcac
tactatgatcttcgcaacactaagcagccaatcatggtgttcaaagggcatcgcaaggca
gtctcctacgcaaaatttgtgagtggggaagaaattgtctctgcgtcaacagacagtcag
ctgaagctgtggaacgtagggaagcctcactgcttgcgctccttcaagggtcacatcaat
gagaagaatttcgtagggctggcatccaacggagactacattgcctgtggaagcgaaaat
aattccctttacctatactataagggcctctcaaagacacttctgacattcaagtttgac
acagtcaaaagtgtcctggacaaggaccggaaagaagatgacacaaacgagtttgtgagt
gctgtatgctggagggcactaccagatggggagtccaatgtgctgattgctgctaacagt
cagggtacaattaaggtactggagctggtatga

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