Limnospira platensis: NIES39_A02090
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Entry
NIES39_A02090 CDS
T02608
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
arp
Limnospira platensis
Pathway
arp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES39_A02090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arp03019
]
NIES39_A02090
03400 DNA repair and recombination proteins [BR:
arp03400
]
NIES39_A02090
Enzymes [BR:
arp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES39_A02090
Messenger RNA biogenesis [BR:
arp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES39_A02090
DNA repair and recombination proteins [BR:
arp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES39_A02090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
RecQ_Zn_bind
TrmB
HTH_9
Motif
Other DBs
NCBI-ProteinID:
BAI88048
LinkDB
All DBs
Position
complement(215520..216914)
Genome browser
AA seq
464 aa
AA seq
DB search
MVARIFTPTSWQWNYLYIDGQRRAETNQFFKKKGIKSAAYDGQLDNELRQKLENDLLANQ
LKVLVATTALGMGFDKPDLGFVIHYQRPGSVVHYYQQVGRAGRAVDEAYGILLSGKEDEE
ITNYFIKNAFPSSHNIQQILEALLTKNELSVPEIEQSVNIGRGQIEKVLKFLSLESSPPV
VKRKSKWYATPAALRYQLNSHKIDEITRIREEEQAEMRDYMNSQECLMQFLQCSLDDPNP
APCGKCAVCLNRPLLKTTCNQELVKEAIEYLKRTYQTIEPRRQFPKNALLEYNFNGKISH
QLQAEAGRSLCCWGDPGWGEQVQQGKYQNNHFDDKLVEAMVEMINKWQPQPFPTWVTCVP
SLTRPHLVPNFAERVAVRLNLRFLPVVEKIRETPPQKKMSNSYQQAHNLDGAFRINYQEV
QPGSVFLIDDMVDSRWTVTIITALLRQSGSGRVFPVALTLNSFR
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
ttggttgctcgaatatttaccccaacttcctggcagtggaattatttatacattgacggt
cagagacgcgcggaaactaaccaattttttaaaaaaaaaggcattaaatccgccgcttat
gatggtcaacttgacaatgaattgcgacaaaaattagaaaatgatttattggctaaccaa
ctaaaagtcttagtggcaaccacagctttaggtatgggttttgataaaccggatttaggc
tttgttattcattatcaaagacctggttcagttgtccattattatcaacaagtcggtcga
gccggacgtgctgtagatgaagcctatggtattttattaagtggaaaagaagatgaggaa
atcactaattactttatcaaaaatgcctttccttcctcacataatatccaacaaattctt
gaggcgctgctgactaaaaatgaattatcagtgcctgaaattgaacaaagtgtcaatatc
ggtcgtggtcaaattgagaaggtgttaaaattcctgtctttagaatcttctcccccggta
gttaaacgcaagtcaaaatggtatgctaccccggcagcattacgttatcaactgaatagt
cataaaattgatgaaattactcgtattcgagaggaagaacaggcggaaatgcgagactat
atgaacagtcaagaatgcttgatgcaattcttacaatgttccctcgatgaccccaaccca
gcaccctgtggaaagtgtgcggtttgtttaaatcgacccttactcaaaactacctgtaac
caggagttagtcaaggaagctattgaatatttaaaacgcacctatcaaacgattgaacct
cgccgacaatttcccaaaaatgccttacttgaatataattttaatggcaagattagtcac
caattacaagcagaagcgggacgcagtttgtgttgttggggtgatccgggttggggggaa
caggtacaacaaggaaaatatcaaaataatcactttgatgataaattggtagaggctatg
gtggagatgattaacaaatggcaaccgcaacctttccctacatgggtaacttgtgttcct
tccctaactcgtccccatttggtgccaaattttgctgaaagagtagccgttagattaaat
ttacgcttccttccagttgtggaaaaaatccgtgaaacaccaccccaaaaaaagatgagc
aatagctatcaacaagcccataatttagatggtgcttttcggattaattatcaggaagtt
caaccagggtctgtatttttaattgatgatatggtagactcccgttggactgtaactata
attactgcactgttgcgacagtcgggaagtggtcgggtttttcctgtggctttgacatta
aattcttttaggtaa
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