Limnospira platensis: NIES39_C02230
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Entry
NIES39_C02230 CDS
T02608
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
arp
Limnospira platensis
Pathway
arp03410
Base excision repair
arp03430
Mismatch repair
arp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
arp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES39_C02230 (recJ)
03430 Mismatch repair
NIES39_C02230 (recJ)
03440 Homologous recombination
NIES39_C02230 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arp03400
]
NIES39_C02230 (recJ)
DNA repair and recombination proteins [BR:
arp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIES39_C02230 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIES39_C02230 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES39_C02230 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
OTCace
Toprim
Motif
Other DBs
NCBI-ProteinID:
BAI89091
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All DBs
Position
1244775..1246835
Genome browser
AA seq
686 aa
AA seq
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MEDQPTITTEALLPKQRWHIFPERPEIAQSLSETTGVHPIIAQILINRGIETTEQAEAFL
NPQSQTLPEPMEEFPDLPKTLQLLQNAIENQQKIAICGDYDADGMTSTALLIRALSQLGA
DITSAIPSRMQEGYGINNRIVEEFHEQGISIIITVDNGISAVGPVARAKELGLTVIITDH
HDLPPKLPNADAILNPKLLPKISPYYGLAGVGVAYILALSLAKLRGEVDSLRWQLLELFT
LGTIADMAPLNGVNRRWIKRGLKILPQSKIPGVQALIQIAGLANQQPNLNNSTTPMKPED
IGFRLGPRINAIGRIGNPQVVIELLTTDHMGTALEQAKECEETNLLRKELCADIEQEAID
WYENSNINLEQERVLVPCQKNWHHGVIGIVASRLVERYGVPVFICTYEDEENLRGSARGI
PEFHVFEALQFCQDILGKFGGHKAAGGFSLPAANLPKFKQRLSEFAHQCLQVEHLRPLVN
VDVRINLMDINYKLYDQIDKIQPCGIENSEPVFWTPKLRVLHQKIVGKSHIKLTLSQDLP
PEITMAVLPTISAIAWRWADYFPLPSPLDFAYKLRKNTWNNQTAIELEIVGVRLPENPVP
LNRRLAEFNYCDRTYKCNITPIGDNWELRIRNQKGEVLAIQTGQKTGLLGISRSQAKTVD
ISHPFFMKLIEAAQAALDVKLPFFNN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggaagaccaacctaccatcaccacagaagcactactaccaaaacagcgctggcatatt
ttcccagaacgccccgaaattgcccagagtctatctgaaactaccggggttcaccctatt
attgcccaaatcctgatcaaccggggaatcgaaaccacagaacaagccgaagccttcctt
aacccccaatcccaaactctcccggaacctatggaggagttccctgacttacccaaaacc
ctccaattgctgcaaaatgccattgaaaatcaacaaaaaattgccatctgtggggactat
gatgctgatgggatgacgagtacagccttattaattagagccctttctcaattaggcgca
gatattacatcagcaattcctagtcggatgcaagaaggctatggtattaataatcgcatt
gtcgaggaatttcacgagcagggtatctccataattatcactgtggataatggtatttct
gccgtcggtccggtggctagggcgaaagaattggggctaactgtgattatcacagaccac
catgatcttccccccaaactccctaacgctgatgctattctcaatcccaaattactgcca
aaaatttccccatattatggcttggctggagttggtgtagcttatatattagccctatcc
ttagctaaactccgaggagaagtggacagtttgcgctggcagttattggaactatttacc
ctaggaactatcgctgatatggctcctttaaatggagtaaatcgccgttggataaaacgg
ggtttgaaaattttgccgcagtctaaaattccgggagtgcaagcattaattcaaatagca
ggattggctaaccaacagccgaatttaaacaattctactactccgatgaaaccagaagat
atcggctttcgcctcggacctcggattaatgcgatcggacgcattgggaatccccaggtg
gtgattgaacttttaactactgaccacatgggaactgcattagaacaggcgaaagagtgc
gaagaaactaacctactacgcaaagaactttgtgctgatattgaacaggaagctattgat
tggtatgaaaatagtaatattaatcttgaacaagaacgggttttagttccctgtcaaaaa
aattggcatcatggagttattggaattgtggcttcccgactggtggaacgctacggagtt
ccggtgtttatttgtacttatgaagatgaggaaaatctgcgggggtcggcgcgcggtatt
ccggaatttcatgtgtttgaagcactgcaattttgtcaagatatcctcggtaaatttggc
ggacataaagcggctggtggcttttctttaccggcggctaatttgcctaagtttaaacag
cgcttgagtgaatttgctcatcaatgtctgcaagtggaacatcttcgacctttagttaat
gttgatgttcgcataaatttgatggatattaactataaattatatgaccaaattgataaa
atacaaccctgtgggattgaaaatagtgagccggttttttggactcctaagctgcgagtt
cttcatcaaaaaatagtggggaaaagtcatattaaactaactttatctcaagatttgcca
ccggaaataactatggctgttttacctactatatctgcgatcgcctggcggtgggctgat
tattttcccctcccttcccccctggattttgcttataaattacggaaaaatacctggaat
aatcaaacggcgatcgagttggaaattgtgggggtgagacttccggaaaacccggttcct
ctaaatcgccgcctggctgaatttaattattgcgatcgcacttacaagtgtaatataact
cctattggagacaactgggaattaagaattcgcaaccaaaagggagaggttctagctatt
caaactggacaaaaaaccgggttattaggaattagtcgctcacaagccaaaactgttgat
atttcgcacccctttttcatgaaattaatcgaagccgcccaagccgccctggatgttaaa
ttaccattttttaataattaa
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