Limnospira platensis: NIES39_J05380
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Entry
NIES39_J05380 CDS
T02608
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
arp
Limnospira platensis
Pathway
arp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES39_J05380 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arp03019
]
NIES39_J05380 (rne)
03009 Ribosome biogenesis [BR:
arp03009
]
NIES39_J05380 (rne)
Enzymes [BR:
arp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NIES39_J05380 (rne)
Messenger RNA biogenesis [BR:
arp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NIES39_J05380 (rne)
Ribosome biogenesis [BR:
arp03009
]
Prokaryotic type
rRNA processing factors
NIES39_J05380 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
BAI91584
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All DBs
Position
3805331..3807583
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AA seq
750 aa
AA seq
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MSKQIIIAEQHRIAAVFSEDEIQELVVATGNQQVSDIYLGIVENVLPGIDAAFVNIGDPE
RNGFIHVSDLGPLRLKRSSGSITELLMPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYLV
LMPYGRGVNLSRRIRSEAERNRLRALAILIKPSGMGLLVRTEAEGMAEDAILEDLEALQK
QWEEVQQEATSTRPPALLNRDNDFIQRVLRDMYSTEVNRIVVDSADGIKRVKQHLVNWSV
GKTPQGVLIDHHRERIPILEYFRVNAAIREALRPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTRSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFNKVL
KADKSRPQIAQLSELGLVELTRKRQGQNIYELFGRSCPTCNGLGHLIHLPGESAADTAEA
SERFMVGPKGLSSTPGLDTGTRTAAVDNTRRVQANVSSVSSAETVYRDDSEIVSAETDTG
GNFPELELLNHPSYQDIGGTSNIRRRRRRRIGDLEPLVREEEGNRGNLRVNSGNTYNETT
KTETNTDVAFSGRQELTERFPKSVKSDAIKAIPEPPEVVAVEMTGDEQDVYALMGISPLV
LSNQSVKNARNAIVTVRLPGDTPLPLSSILEEETDTAISWAPTLPIPNAVTVPPAENLIS
QDDQNLVYNHVEDTTDDSEESPEITESIEVIDPSDLTVTDINDVTDPNDDIDDSDYIYPS
EDSENLETEGDAENTPVIRRRRRRSSAVSE
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcaaattattattgcagagcagcataggatagctgcagttttttctgaagat
gagattcaagaacttgtggtggccaccggaaaccaacaagttagtgatatttatttagga
attgttgaaaatgtcctgccaggaatagacgcggcttttgtcaatattggcgaccccgaa
cgtaacggatttattcatgtttccgatttgggaccactaagattaaagcgatcgtccggt
tccattaccgaactattgatgcctcaacaaaaggttctagtccaagtgatgaaagaaccc
accggcaccaaaggaccaagattaacagggaatattaccctaccaggacgctatctcgtc
ttaatgccctatggccgaggtgtaaatctatctcgccgtatccgatcagaagcagaacgc
aatcgtcttagggccttagcgattttaattaaaccctctggtatgggtttattagtccga
accgaagctgagggtatggcagaagatgccattttagaagacttagaagccctacaaaaa
cagtgggaagaagtccaacaagaggctacctcgacccgacctcccgctctactcaatcga
gataatgattttatccaacgggtgctaagagatatgtatagcaccgaagttaatcgcatt
gttgtagattccgctgatggcattaaacgagttaaacagcatttggtcaactggagtgtt
ggtaaaactccccaaggagtcttgattgaccaccaccgagaacgtatccctatccttgaa
tatttccgcgttaatgctgctattcgagaagcactacgccctagggtagatttgccctcc
ggaggatacattatcattgaaccaacagaagccttgaccgtcattgacgttaactccggt
tcctttacccgttcggcgacttctcgggaaactgtcctctggactaactgtgaagcggct
accgaaatcgcccgtcaactgcgcctacgcaatatcgctggggtgattattgttgacttt
attgatatggactcccgccgagatcagctacaagtccttgaacactttaataaggtcttg
aaagcagataagtctagaccacaaattgctcaattgtctgagttgggtttggtcgagtta
accagaaaacgccaaggacaaaatatttatgagttgtttggccgtagttgtcccacttgt
aacggcttgggacatctgattcatctccccggagagtcagcagccgataccgctgaagcc
tctgaacgattcatggttggtccgaaagggttatctagcacccctggtttggataccgga
actcgcacagccgccgtagacaacactcgccgagttcaagccaatgtgtcttctgtatcg
tccgctgaaactgtttatagggatgattcggaaatagtttctgctgaaactgatacagga
ggtaatttccctgagttggagttgcttaatcatcccagttatcaagacattggcggtact
agcaatatccgccgccgtcgccgccgtcgcattggtgatctggaacctttagtgcgtgag
gaagagggaaatcgtggtaatctccgcgttaactcgggtaatacctacaatgagacgact
aagactgaaactaataccgatgtggctttctccggtcgccaagaacttactgagcgattt
cctaagtccgttaagtctgatgcgatcaaggctatcccagaacctccagaggtcgtagct
gtggaaatgactggggatgaacaggatgtttatgcgctgatggggatttctcccttggta
ctctctaaccagtcggtgaaaaatgctagaaatgcgatcgtcacagttcgtttaccaggt
gatacgcctttacctctgtccagcattttggaggaggaaaccgacaccgctatctcctgg
gctccaactctaccaattcctaatgctgtgacagtcccacctgctgaaaatctgatctct
caagatgaccaaaacctcgtttataatcatgtagaagatacaactgacgattctgaagag
tccccagaaatcacagaatctatcgaggtcatagatcctagtgatctcacagtcacagat
attaatgatgtcacagatcctaatgatgatatcgacgattctgattatatttatccctcg
gaagattcggaaaatttggaaactgaaggcgacgctgaaaatacacctgttattcgccgc
cgccgccgccgttcttcggccgtttctgagtga
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