Arthrobacter sp. Rue61a: ARUE_c21950
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Entry
ARUE_c21950 CDS
T02215
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
arr
Arthrobacter sp. Rue61a
Brite
KEGG Orthology (KO) [BR:
arr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arr03019
]
ARUE_c21950 (hrpB)
Enzymes [BR:
arr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ARUE_c21950 (hrpB)
Messenger RNA biogenesis [BR:
arr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ARUE_c21950 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_11
CON_HrpB
HA2_N
AAA_30
AAA_22
AAA_16
Helicase_RecD
AAA_19
ResIII
UvrD-helicase
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AFR29098
LinkDB
All DBs
Position
2421017..2423788
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AA seq
923 aa
AA seq
DB search
MSASLPRTSATALSSTSPLSARDAAPPKRPRFLRGGVAFSLSPNRDNGLVTFRLDTIGTG
LVFADSLSNLTAALATQGGGGAAVVQAPPGTGKTTLVPPLLANLVSEQSPGRPRVVVTQP
RRVAARSAARRLASLDGSQLGRRVGYTVRGESKVSQDTVVEFVTPGILLRRLLADPGLED
VSAVVLDEVHERGLETDLLVGMLAEVRELRGDITVVAMSATLDAARFATLLGTGLDGGDP
APVVDCPSALYPLKVQWVPAREHRLDARGVSRLFLDHVAHTAATTHAAALAPDADVDALV
FLPGAREVSDVATRLRGLVSGNVEVLELHGQIGPEAQDRAVSGREPGGLPRIIVSTSLAE
SSLTVPGVCVVIDSGLSREPRRDAGRGMSGLVTVSCSRASADQRAGRAARQGPGTVVRCY
DQQAYAAAPAHQTPEISVADLTSAALVLACWGAPGGVDLKLPDAPPAAAMNDAVEVLREL
GAVTAEGTVTAVGKTLARIPADPRLARALLDGSAVAGRRAAAETVALVAGGQRAPGADLN
KLLSALRSGSDPGARRFAEDVQRMETLVRKEAAAVVRPKAAADVTAGEATGLVVALAFPD
RVARRVPGDGSTTYLLSSGTRAGLPSGSSLSGHDWLAVAEVSRAQGRDAAGTGAVIRSAA
PLSAELAEAAAPDLLTEKVEAKFDQGRVMARLERRLGAIVLSSTPVRPTAESGRRAVSEA
LEKSGLSLIGWSPAADALRRRLALLHRELGSPWPDVREAALLSRLEDWLGPELEAMATGA
AVSSINLVDPLRRLLPWPDAARLEDLVPERLEVPSGSRVRIDYPEVSDRSSGDHDDGRPV
VAVKLQECFGWDSTPRLLAGRVPVLFHLLSPAGRPLAVTDDLASFWSGPYSQVRAEMRGR
YPRHPWPEDPWTAQATAKTKNRM
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgtccttgcctcggacgtccgctaccgctttgtcatcgacgtctccactatcg
gctagagacgcagcaccaccgaaacggccacgcttccttcgagggggtgtggccttttcc
ctgtcacccaacagggacaatggtctggtgactttcagactggacaccataggtacgggg
ctggtgtttgctgattccctctcgaacctgaccgccgccctggcaactcagggcggcggc
ggcgcggcagtggtacaggcgccgcccgggacaggtaagaccaccctcgtgcctccgctg
ctcgccaacctagtgtccgaacagagtccaggccggccgcgcgtcgtcgtcacgcagccc
cgccgtgtagcggcccgctcagccgcgcgccgcctcgcgtcgctggacggcagtcagctg
ggccgccgggttggctacaccgtccgtggggaaagcaaagtcagccaggacacggtggtt
gagttcgtcacgccaggtattctcctgcggcgtctccttgccgaccccggtcttgaggac
gtcagcgctgtggtcctggatgaggtccacgaacgtggactcgaaacggatctcctggtg
ggcatgcttgcggaggtccgggaacttcgcggcgacattaccgtggtggcgatgtcggca
accctcgacgccgcgcgttttgccacactgctggggacagggctcgacggcggcgacccg
gctcccgtcgtcgactgcccttccgcgctgtatccgctgaaggtccagtgggttcctgcc
cgcgagcaccgcttggacgctcgaggcgtttcccggcttttcctcgaccacgtggcccac
acggcggcgacaacccacgcagcagccttggccccggacgccgacgtagacgccttggtt
ttccttccgggagcccgtgaagtgtccgacgtcgccactcgtcttcgtggtctggtgtcg
gggaacgtggaggtgctggagttgcacggccagatcggtccggaagcccaggaccgcgcg
gtatccggccgtgaacctggcggcctgccgcgcatcatcgtgtctacttccttggctgaa
tcgtcgctcacggttcccggcgtgtgtgtggtcatcgactcggggctttcaagggaaccg
cgccgggacgccggccgcggcatgtccggactcgtgaccgtttcctgctccagggcctcg
gctgatcagcgtgccggccgtgcagcacggcagggtccgggtacggtggtccgctgctac
gaccagcaggcctatgctgcagctccggcacatcagacacccgaaatctccgttgcagac
ctcaccagcgctgctttggtccttgcatgttggggtgcgccgggcggcgtagacctgaaa
cttcccgatgcaccgccggctgcggccatgaacgatgccgtggaggtcctccgggagctg
ggtgccgtgacagcggaaggaacagtcaccgccgtgggcaagaccttggcccggatcccc
gccgacccccggcttgcccgcgccttgctggacggatcggcggtggcgggtcgacgcgca
gcggctgaaacagtggccctcgttgccggcgggcagagggcaccgggggcggacctcaac
aagctgctgtcggccctgcgctcaggttcggacccgggcgcgcgtcgtttcgcggaagac
gtccagcggatggagacgttggtacggaaggaagctgccgccgtcgtgcgtcccaaggcg
gccgccgatgtcacggcaggggaagcgacgggccttgtggtggcgctggctttcccggac
cgcgtggcaaggcgtgttcccggcgacggctccaccacgtacttgttatcgtccggaacg
cgcgccggacttccctccggtagttcactgtccgggcatgactggcttgcagttgccgag
gtgtcccgcgcgcaggggcgcgatgccgcaggaacgggcgccgtcatccgttcggccgcg
ccgttgtcggccgaattggcggaagcggccgcaccggacctcctcacggagaaggtggag
gcgaagttcgatcaaggccgcgtgatggccaggctggagcggcgcttgggtgccatcgtg
ttgtcctccacgcctgtccgccccaccgccgaatccggccgtcgtgccgtgtccgaggcg
ctggagaagtcgggattgtccctgatcggctggtcacccgcagccgatgccctgcggagg
cgtcttgccttgctgcaccgtgaactcggaagcccgtggcccgacgtccgcgaagcagcc
cttctgtccaggctggaggattggctgggcccggagctcgaggcgatggccaccggcgcc
gccgtgagttccatcaaccttgttgatcctttgaggcgcctgcttccgtggccggacgcc
gcgcggctcgaagacctcgtgccggagcgtctggaggtgccgagtggctcgcgtgtgcgc
atcgactatcccgaggtttcggatcgcagcagcggggatcacgacgacggccgtccggtg
gtggcggtcaagcttcaggaatgcttcggttgggacagcacgccgcggctcctagctggc
agggtccctgttctgtttcatttgttgtccccggcaggaaggccgttggctgtcacggac
gatctcgcgtcgttctggtccggtccctactcccaggttcgggccgagatgcgtgggcgc
taccccaggcatccctggcccgaagacccgtggacagcgcaggctacggccaagaccaaa
aaccgcatgtag
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