Arthrobacter sp. Rue61a: ARUE_c31690
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Entry
ARUE_c31690 CDS
T02215
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
arr
Arthrobacter sp. Rue61a
Pathway
arr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ARUE_c31690 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arr03019
]
ARUE_c31690 (deaD)
03009 Ribosome biogenesis [BR:
arr03009
]
ARUE_c31690 (deaD)
Enzymes [BR:
arr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ARUE_c31690 (deaD)
Messenger RNA biogenesis [BR:
arr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ARUE_c31690 (deaD)
Ribosome biogenesis [BR:
arr03009
]
Prokaryotic type
rRNA helicases
ARUE_c31690 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Motif
Other DBs
NCBI-ProteinID:
AFR30051
LinkDB
All DBs
Position
complement(3476306..3478486)
Genome browser
AA seq
726 aa
AA seq
DB search
MTENLNENFDAESADVATTESADVAETSAPAEAEAPAAAAAPVETVAAETAAPAFTEAPA
PKAEEEEEEGVRFVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTG
KTAAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPV
YGGSAYGPQLAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADD
VEQIFQQTPETRQVALFSATMPGQIRRMSKQYLNNPAEISVKSKTTTGANTKQRYLQVMG
PHKLDALTRILEVEEFDGVIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVD
ALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFM
TPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLESEDVAAFRDLISS
YEEEHNVPASEIAAALAVMAQGGQPLLVKELPAAPEYQKRERSKDGFGSRGPTRALTEGN
ATYRIAVGRRQRVMPGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALS
RTRIGGELINLELDNGRRPSGDRGGYSGGGAGGRGGYGDRENRGGGNFKGSGGFKKDFRK
SDGERTSADRGGRSYSDRSERTAGSFGDRDRGQASGSRFGGHGDGARKPRTGGEGSNRDF
NRKGKW
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaatctcaacgaaaacttcgacgctgagtccgctgatgtagcgaccaccgag
tccgctgatgtagcggagacctccgctcccgccgaagctgaagcaccggctgctgccgct
gcccccgtcgagaccgttgcagctgagactgcagcccccgccttcaccgaagctcctgcc
ccgaaggcagaagaagaggaagaagaaggcgtccgcttcgtcgatcttggcatcgacgga
cgcgttctggccgccctgcaggacgtcggctacgaaaagccgtcccccattcaggcagcc
accatcccgctcctcctcgaaggccgcgatgttgtaggcctcgcacagaccggtaccggc
aagaccgcagctttcgctgttcctgccctgtcccgcctggctgaacttcacgacctcaac
ggcccgtcccgcaagacccaggcgcttgttctggctccgacgcgtgaactggccctccag
gttgctgaggcattcacctcctacgccaagcacattgatgacttcacggtccttcccgtt
tacggtggctcggcttacggcccccagctcgccggcctgcgccgaggtgcacaggttgtt
gtcggtacccccggccgcgtgatcgaccacatcgccaagggttccctggacctgtccgaa
ctccagtacctggtgctggacgaagctgacgaaatgctgcgcatgggctttgccgatgac
gttgagcagatcttccagcagactcctgaaacccgccaggttgccttgttctctgccacc
atgccgggccagatccgccgcatgtccaagcagtacctgaacaacccggctgagatctcg
gtgaagtccaagaccaccaccggcgccaacaccaagcagcgctacctccaggtcatgggc
ccgcacaagctggacgccctgacccgcatccttgaggttgaagagttcgacggcgtcatc
gccttcgtgcgcaccaagatggctaccgaggacctggccgacaagctcaaggcccgcggt
ttccaagctgccgccatcaacggcgacatcccgcagcagcagcgcgaacgcactgtggac
gcgctgaaggaaggccgcatcgacatcctggttgctaccgacgtcgcggcccgtggcctt
gacgttgagcgcatcagccacgtcatcaactacgacatcccccacgacaccgagtcctac
gtgcaccgcattggccgtacgggccgtgcaggccgttccggcgatgccatcctgttcatg
acgccgcgtgagaagtacctgctgcgttccatcgaaaaggccacgcgccagccggtggag
cagatgcacctgcccacagctgagaccgtgaacacgttgcgccttggcaagttcgccgag
cgcatcacggagaccctcgagtccgaggatgtcgcagcgttccgcgacctcatctcctct
tacgaggaagagcacaacgtgccggcctccgagatcgctgcagccttggccgtcatggcc
cagggtggacagcctttgctggtcaaggaactgcctgccgctcctgagtaccagaagcgc
gagcgctccaaggacggcttcggttcccgtggcccgacccgtgcgctcaccgagggcaac
gccacctaccggatcgccgtcggacgccgtcagcgcgtcatgccgggttccatcgttggt
gccattgccaacgaaggtggcatctcttccgcacagatcggtggcatcgacatccgctcg
gaccactccctggtggagctcccggcagacctgagccccgagcagctgcgcgcactgtcc
cgcacccgcatcggtggcgagctgatcaacctcgaactggataacggacgcaggcccagc
ggcgaccgtggcggttactccggtggcggcgctggtggacgcggtggttacggcgaccgc
gaaaaccgtggcggcggaaacttcaagggcagcggcggcttcaagaaggacttccgcaag
tccgacggcgagcgtacctctgctgatcgtggtggacgctcctacagcgaccgttcagag
cgcaccgcaggcagcttcggcgaccgcgatcgtggccaggccagcggttcccgcttcggt
ggtcacggtgacggtgcccgcaagccccgcaccggcggcgaaggcagcaaccgcgatttc
aaccgcaagggcaagtggtaa
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