Arsenicicoccus sp. oral taxon 190: ADJ73_00560
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Entry
ADJ73_00560 CDS
T04014
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ars
Arsenicicoccus sp. oral taxon 190
Pathway
ars03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ars00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ADJ73_00560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ars03400
]
ADJ73_00560
Enzymes [BR:
ars01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ADJ73_00560
DNA repair and recombination proteins [BR:
ars03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ADJ73_00560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
RecG_dom3_C
AroM
Motif
Other DBs
NCBI-ProteinID:
AKT50191
UniProt:
A0A0K1F6Y5
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All DBs
Position
1:complement(115408..119001)
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AA seq
1197 aa
AA seq
DB search
MPLPALLDVLARDATVRRVLQEVGAEQLVDVAAATGSRAPLLALLEQRAPVLAVTATGRE
ADDLAAALRCFLPHDAVAEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPAADDPAYGP
VRVLVASVRALIQPIATGLGELEPVALQPGDERPLEDVVEALVGAAYARTDLVERRGEFA
VRGGILDVFPPTEEHPLRVEFWGDTVEEIRWFRVADQRSLEVSGHGLWAPPCREILLTDA
VRERARALAPQLPGVADLLDKVAEGIAVEGMESLGPALVDGMESLLDTLPQGTHVVVCDP
ERVRTRARDLVATSQEFLEASWANAAAGSAVPVDLQSTLGTASYWSLGQVREHALATGRP
WWTLTPFAADTELSELMDSPDETVSFTVPTTDTPSYRGDREAVSADLAGWLHDGRQVLVV
TEGPGLARRLVELLGEGGLAARLLEPDAPLEAGVASITCGSLGRGFVCDSVDLVVLTEAD
LTGSGGRAATTKDMRKLPSRRRNQVDPLQLKPGDFVVHEQHGVGRFVEMTQRTVGGATRE
YLVLEYASSRRGQPGDRLFVPTDQLDQVTRYVGGEQPTLSKMGGSDWQKTKSRAKKFVKQ
IAGELIRLYSARMATPGHAFGPDTPWQRELEDAFAYVETPDQLSSIDEVKEDMQKSVPMD
RLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHYNTFSERYAQFPVTVKAL
SRFQSDKEAKEVLAGLADGSVDLVIGTHRLLSKEISFKDIGLVIIDEEQRFGVEHKEQLK
ALRTSVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGAYDERQVVAAIR
RELLREGQVFLVHNKVSTIERAASRLRELVPEARIETAHGQMGEHRLEQVVLDFWERKFD
VLVCTTIVETGLDISSANTLIVERADMLGLSQLHQLRGRVGRGRERAYAYFLYPPEKPLT
ETAHDRLQTIASHTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAV
ADFRGDDAAAQPMEIKIELPVDAHLPHEYVPGERLRLEAYKKLAVVEDEAALADIVAELT
DRYGTPPPAVDNLIAVARLRTVARRAKVNDIAVQGKFVRFGPVELRDSQRLRLMRLYPGT
VIKEAQHQLLVPAPMTARVGGKVLRDVDILRWAADLLQAVLLDDIAAAATAAERQRD
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgcccgcgctcctcgacgtcctcgcccgtgacgccaccgtgcgccgcgtgctg
caggaggtcggcgccgagcagctggtcgacgtcgccgccgccaccggctcccgggccccg
ctgctcgccctgctggagcagcgcgcgccggtgctggccgtcaccgccacggggcgcgag
gccgacgacctcgccgcggcgctgcggtgcttcctgccgcacgacgcggtggcggagttc
ccgagctgggagaccctgccccacgagcggctgagcccgcgctcggacaccgtggggcgc
cgcctcgccgtgctgcggcggctcgcgcacccggcggccgacgacccggcatacgggccg
gtgcgggtgctggtggcctcggtccgggcgctgatccagccgatcgcgaccggcctgggt
gagctggagccggtcgccctgcagccgggggacgagcggccgctggaggacgtggtcgag
gcgctggtgggcgcggcctacgcgcgcaccgacctggtcgagcggcgcggcgagttcgcg
gtccgcggcgggatcctcgacgtcttcccgcccaccgaggagcacccgctgcgcgtggag
ttctggggcgacacggtcgaggagatccggtggttccgggtcgccgaccagcgcagcctc
gaggtgtccggccacggcctgtgggccccgccgtgccgcgagatcctgctgaccgacgcg
gtgcgcgagcgcgcccgcgccctggcgccgcagctgcccggcgtcgccgacctgctcgac
aaggtcgccgagggcatcgccgtggaggggatggagtcgctcggccccgccctggtcgac
gggatggagagcctgctggataccctcccgcagggcacccacgtggtcgtgtgcgacccc
gagcgggtgcgcacccgggcccgtgacctggtggcgaccagccaggagttcctggaggcc
agctgggccaacgccgccgccggcagcgcggtccccgtcgacctgcagagcaccctcggc
accgcctcctactggagcctcggccaggtgcgcgagcacgccctcgccaccgggcggccg
tggtggaccctgacccccttcgccgcggacacggagctgtcggagctgatggacagtccc
gacgagacggtgagcttcacggtcccgacgacggacacgccctcctaccggggggaccgg
gaggcggtcagcgccgacctcgcgggctggctgcacgacgggcggcaggtgcttgtcgtc
accgagggcccggggctcgcgcggcggctcgtcgagctgctcggcgagggtgggctggcc
gcgcggctgctcgagcccgacgccccgctcgaggccggcgtcgcgagcatcacctgcggc
tcgctggggcgcgggttcgtctgcgacagcgtcgatctcgtggtgctgaccgaggccgac
ctgaccggctcgggcggccgggccgccaccaccaaggacatgcgcaagctgcccagccgc
cgtcgcaaccaggtcgacccgctgcagctcaagcccggcgacttcgtggtccacgagcag
cacggtgtcgggcgcttcgtggagatgacgcagcgcaccgtcggcggggccacccgcgag
tacctcgtgctggagtacgcctcctcccggcgcggccagcccggcgaccggctcttcgtg
cccaccgaccagctcgaccaggtcacccgctacgtcggtggcgagcagcccacgctgtcc
aagatgggcggctcggactggcagaagaccaagtcccgggccaagaagttcgtcaagcag
atcgccggcgagctcatccggctctacagcgcccgtatggcgacccccggtcacgccttc
ggaccggacaccccctggcagcgcgagctcgaggacgccttcgcctacgtcgagaccccg
gaccagctgagcagcatcgacgaggtcaaggaggacatgcagaagtccgtccccatggac
cggctgatctgcggtgacgtcggctacggcaagaccgagatcgcggtccgggcggccttc
aaggcgatccaggacggcaagcaggtcgcggtgctggtccccaccacgctgctggtgcag
cagcactacaacaccttctccgagcgctacgcgcagttcccggtgacggtcaaggcgctg
tcccggttccagtccgacaaagaggccaaggaggtgctggccgggctcgcggacgggtcc
gtggacctggtcatcggcacccaccggctgctgtccaaggagatctccttcaaggacatc
gggctcgtgatcatcgacgaggagcagcgcttcggagtcgagcacaaggagcagctcaag
gcgctgcgcacctcggtcgacgtgctcgccatgagcgcgacccccatcccgcggaccctg
gagatggccgtcaccgggatccgcgagatgtccacgctcgccaccccgcccgaggagcgc
caccccgtcctcacctacgtcggggcctacgacgagcggcaggtggtcgccgccatacgt
cgcgagctgttgcgcgaggggcaggtcttcctcgtccacaacaaggtgtccaccatcgag
cgggccgcgtcgcggctgcgcgagctggtgccggaggcgcgcatcgagacggcgcacggc
cagatgggggagcaccgcctcgagcaggtcgtgctggacttctgggagcgcaagttcgac
gtgctggtgtgcaccacgatcgtcgagacgggcctggacatctccagcgccaacaccctc
atcgtcgagcgcgccgacatgctcgggctgtcccagctgcaccagctgcggggccgggtc
gggcgtgggcgggagcgggcctacgcctacttcctctaccccccggagaagccgctcacc
gagacggcgcacgaccggctgcagaccatcgccagccacaccgacctcggcgccggcatg
caggtggcgatgaaggacctcgagatccgcggcgcgggcaacctgctcggcggcgagcag
tccgggcacatcgcgggcgtcgggttcgacctctacgtgcggatggtgggggaggccgtg
gccgacttccgcggggacgacgcggccgcgcagccgatggagatcaagatcgagctgccg
gtcgatgcgcacctgccccacgagtacgtccccggcgagcggctgcggctggaggcctac
aagaagctcgcggtcgtcgaggacgaggccgccctcgcggacatcgtcgccgagctcacc
gaccgctacggcacgccgccgcccgcggtggacaacctgatcgcggtggcgcgcctgcgc
accgtcgcccgccgggccaaggtcaacgacatcgcggtgcagggcaagttcgtgcggttc
gggccggtcgagctgcgcgacagccaacggctgcggctgatgcggctctacccgggcacc
gtgatcaaggaggcccagcaccagctcctcgtcccggcgcccatgacggcgcgggtgggc
ggcaaggtgctgcgcgacgtggacatcctgcgctgggcggccgacctgctccaggcggtg
ctgctcgacgacatcgctgcggccgccacagcggcggagcgtcagcgagactga
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