Arsenophonus sp. aPb: QE177_08600
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Entry
QE177_08600 CDS
T11176
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arse Arsenophonus sp. aPb
Pathway
arse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QE177_08600 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arse03400
]
QE177_08600 (mfd)
Enzymes [BR:
arse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QE177_08600 (mfd)
DNA repair and recombination proteins [BR:
arse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QE177_08600 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WGL97285
UniProt:
A0AA95GIQ5
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Position
1907078..1910518
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AA seq
1146 aa
AA seq
DB search
MSAKYYYQLPKQKGDTRHLGCLIGAAAAVECADIVERHPGLVVLITQDTHNALKLCDEIQ
QFSPHSVTMLSDWETLPYDNFSPHQEIISARLANLYRLPTLTKGLLILPVNTLMQKVCPI
NFLTSNALVMHKGDKLSREKLRNNLDKAGYRHVEQVLEHGEYATRGALLDLFPMGSDYPY
RIDFFDEEIDSLRTFDVDSQLTISEVEQINLLPAHEFPTDDKAIELFRSQWREHFDIRRD
PEHIYQQISKKILPAGIEYWQPLFFNQSLSALFDYFPANTLLITQDLAAAVDKFWADTYQ
RYKSRRVDPMRPLLSPETLWLNSEQLNRGLKAWPRIKISVASVSQKAGHINLPYIALPDL
NISQQNTAPLDKLDQFSRNFTGRIIFSAQSAGRRETVQELLARIKINPNRIKTLNETHKP
GFYITVGAAEQGFINQDQQIAFICESDILGERVIQRHTEQRKAINTDLLIRNLAELCPGQ
PVVHLEHGVGRYQGLTTLAAGGIQAEYLMLTYAGNDKLYVPVSSLNLISRYSGGDDESAP
LHKLGGDVWTKAKQKAAEKIRDVAAELLDIHAQRSIKPGFAFKHDKMQYQLFCQGFPFET
TVDQEQAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAITNNQQVAVLVPTTLL
AQQHFDNFRDRFANWPVRIEMLSRFRSTKEQQQIINAAAEGKIDILIGTHKLLQNDIRWH
ALGLLIVDEEHRFGVRHKELIKSMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPS
RRLSVKTFVRQYDDLIVREAILREILRGGQVYYLFNDVKYIEKTKERLESLVPEARFVIG
HGQMRERDLERVMTDFHRQRFNVLICTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSYHQAYAYLLTPHPKAMTLDAQKRLEAIAALEDLGAGFALATHDLEIRGAGELLGA
EQSGQMTTIGFTLYMELLENAVEALKQGKEPSLEELTRQQTEIELRMPVLLPDDYIPDVN
LRLSFYKRIASAKHDTELDELKMELIDRFGNLPDAGKQLLQSTAIRMHAQALGIKRIEAH
EKGGFIEFSEQNRVNATFLIALLQNSPEVYRLDGPNKLKFVKPLITYADRLTFVSQLIAD
FQSHLV
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcaaaatattattaccaactacccaaacaaaaaggtgatactcgccatctgggg
tgtctaattggcgcggcagccgctgttgagtgtgctgatattgtcgaacgccatccgggt
cttgttgttttgatcactcaagatacgcataatgccttaaaattatgtgatgaaatacaa
caattttctccccattcagtaacaatgctgtcggattgggaaacgcttccttatgataat
ttttcaccacatcaagaaattatttcagcgcggttagccaatctttatcgactgccaacc
ctaacaaaaggtttattaattcttccggttaataccttaatgcaaaaagtttgccctatt
aattttctaaccagtaatgccctggttatgcataagggagataaactttcacgtgaaaaa
ttacgtaataatcttgataaagccggttaccgacatgttgaacaagtgctcgagcatggt
gaatatgctactcgtggagcgttacttgatctctttccaatgggcagcgactacccttat
cggattgacttttttgatgaagaaatcgatagcttaagaacttttgatgttgacagccaa
cttactataagcgaagttgagcagataaatttactacctgctcacgaattccccacagat
gataaagccattgagttattccgtagccaatggcgagaacatttcgatatacgtcgcgat
cctgagcatatttatcaacaaatcagtaaaaaaatattacccgcaggaattgaatactgg
caacccctttttttcaatcaatcgttatctgcgctatttgactattttcccgctaatact
ttgctgattacccaagatttagccgcagctgttgataaattttgggctgacacttatcag
cgctataagagtcgccgtgttgatcccatgcgtcctctactatcccctgaaacactttgg
ctaaatagcgaacaacttaatcgaggccttaaggcatggccacgtatcaaaatttccgtt
gcatcagttagccaaaaagcaggccatattaacctgccctatatcgctttacctgattta
aatatcagtcagcaaaatacagcgccacttgataagctcgatcagttcagcagaaatttt
accgggcggattattttttctgcacaaagtgctggacgtcgtgaaacagtacaagagcta
ctggcacggataaaaattaatcctaatagaattaaaaccctgaatgaaactcataaacca
ggtttttatatcacagtgggtgctgctgaacaggggtttattaatcaggatcaacaaatt
gcctttatttgcgaaagcgatattttaggtgaacgggttattcaacgtcatactgaacaa
cgtaaagccatcaatactgacctattgatacgtaatttggcagaattatgtccaggacaa
cccgttgttcaccttgaacatggtgttggacgttatcaggggttaaccactttagctgca
ggcggtattcaagctgagtatttaatgctgacatatgctggcaatgataaactttatgtt
ccagtttcatcgctaaatttaattagtcgttatagtggcggcgatgatgaaagtgcacca
ttacataaattaggtggtgatgtttggactaaagccaaacaaaaagcagccgaaaaaatt
cgtgatgttgccgctgagttgttagatattcacgctcagcgtagtataaagccaggtttt
gctttcaaacacgataaaatgcaatatcaacttttttgtcagggttttcccttcgaaaca
accgtcgatcaagaacaagcaattaatgccgtgttaagtgatatgtgccaaccaattgct
atggatcgcttagtctgtggtgatgtcggctttggtaaaaccgaagtagcaatgcgagca
gcatttctggcaataaccaataatcaacaagttgccgtattggtgccaacaacattgcta
gcgcaacaacattttgataattttcgcgaccgttttgctaactggccagtgcggattgaa
atgctgtcacgctttcgcagtacaaaagaacagcaacaaattatcaacgcagcggctgaa
ggaaaaatagatatcttaattggtacccataaattactgcaaaatgatattcgttggcat
gcacttggattattaattgtcgatgaggaacatcgtttcggggttcgtcacaaagagtta
attaaatcgatgcgagctaatgttgatattctgacattaacggcaacacctattcctcga
acccttaatatggcaatgagtggcatgcgtgatctgtctattattgctacccctccttct
cgtcgattatcggttaaaacctttgttcgtcaatatgatgacttaattgtgcgggaagcc
attttgcgtgaaatattacgtggtggacaagtttactatctgtttaatgatgtaaaatat
attgaaaaaaccaaagagcgtttggagtcgttggtacctgaagcgcgttttgtgattggc
catggtcaaatgcgcgaaagagatctggagcgggtaatgaccgatttccaccggcagcgg
tttaatgtattaatctgcaccactattattgaaacgggaatcgatattcctagcgcgaat
actatcattattgaacgcgcagatcattttggtttagcgcaattacatcaattacgtggc
agagttggtcgttcttaccatcaagcttatgcatatcttttaacaccacatcctaaagcg
atgactctcgatgcgcaaaaacggcttgaagcgatcgcagcgctagaagatcttggcgct
ggctttgcattggcaacccatgatcttgaaattcgtggtgcaggtgagttgcttggtgca
gaacaaagcgggcagatgaccactatcggatttacactttatatggaactgctagaaaat
gctgttgaggcattaaagcaaggcaaagaaccttctttagaagagctaacccgccaacag
actgaaattgagttaagaatgccagtattgctaccggatgattatatccctgacgtcaat
ctcagattatccttttataaaagaatagccagcgccaaacatgacacagagctggatgag
ttaaaaatggaacttatcgatcgttttggtaacttgcccgatgcaggcaaacagttacta
caatctactgccatccggatgcatgcgcaagcattaggcattaaacgcatagaagcgcat
gaaaaaggtggatttattgaatttagtgaacaaaatagagtaaacgccacttttcttatc
gcgttactacaaaactcaccagaggtttatcggctagatggccctaataaattaaaattt
gttaaaccattaatcacttatgctgacaggctcactttcgttagccaattaattgccgat
tttcaatcacatctagtataa
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