Arthrobacter sp. FB24: Arth_3048
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Entry
Arth_3048 CDS
T00421
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
art
Arthrobacter sp. FB24
Pathway
art03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
art00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Arth_3048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
art03019
]
Arth_3048
03009 Ribosome biogenesis [BR:
art03009
]
Arth_3048
Enzymes [BR:
art01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Arth_3048
Messenger RNA biogenesis [BR:
art03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Arth_3048
Ribosome biogenesis [BR:
art03009
]
Prokaryotic type
rRNA helicases
Arth_3048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABK04427
UniProt:
A0JZF7
LinkDB
All DBs
Position
complement(3416642..3418885)
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AA seq
747 aa
AA seq
DB search
MPENHNDATNETAAAETTEMAVETPETAAPVAGSAPVFTEAPAPAEAPAAEERPAAEASA
TEAPKTEAPKTEAPKADPTSGEADTEAEGIRFADLGIDGRVLAALQDVGYEKPSPIQAAT
IPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQV
AEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSEL
QYLVLDEADEMLRMGFAEDVEQIFQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEISV
KSKTTTGANTRQRYLQVMGPHKLDALTRILEVEEFDGVIAFVRTKMATEDLADKLKSRGF
QAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLDVERISHVVNYDIPHDTESYV
HRIGRTGRAGRSGDAILFMTPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAER
ITETLASEDVAPFRDLISSYEEEHNVPASEIAAALAIMAQGGQPLLVKELPAAPEFQKRE
RSKDGFGSRGPTRTLTEGNATYRIAVGRRQRVMPGSIVGAIANEGGISSAQIGGIDIRSD
HSLVELPADLSPEQLRALSRTRIGGELIHLELDNGRKPSGGAGERGGYQGNRGGDRGGYS
GGGDRGGNFKGNGGFKKEFRKNDGERSSADRGGRSFSDRSERSVGADSGASRGQASDSRF
GGHGDGARKPRHGNEGGHRDFNRKGKW
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaatcacaacgacgccaccaacgaaacggcagctgccgagaccaccgagatg
gccgtagaaacccccgagaccgccgctcccgtagcaggctccgcccccgttttcaccgag
gcaccggcacccgctgaggcgcccgccgctgaagaacgtccggccgccgaggcgtccgcc
actgaagccccgaagactgaagcgccgaagaccgaagcccccaaggccgatcccaccagc
ggcgaggctgacactgaagctgaaggcatccgtttcgccgatctcggcatcgacggccgc
gtcctggccgcactgcaggacgtcggctacgagaagccgtcccccatccaggcagcaacc
atcccgctgctgctcgaaggccgcgacgtcgtgggcctggcccagaccggcaccggtaag
actgcagcattcgcagtaccggcactgtcccgcctggccgagctccacgacctcaacggc
ccgtcccgcaagacgcaggcccttgtcctcgccccgacccgcgaactggcgctccaggtt
gccgaggccttcacctcgtatgccaagcacattgacgacttcacggtcctcccggtctac
ggcggctccgcctacggcccccagctcgccggcctgcgccgcggtgcccaggttgtcgtc
ggtacccccggccgtgtgatcgaccacatctccaagggttccctggacctgtccgaactc
cagtacctggtactggacgaggccgacgaaatgctgcgcatgggcttcgccgaagacgtc
gaacagatcttccagcagactccttcggaccgtcaggttgcgctgttctcggccaccatg
ccgagccagatccgccggatgtccaagcagtacctgaacaacccggccgagatctcggtg
aaatccaagaccaccaccggtgcgaacacccgccagcgctacttgcaggtcatgggcccg
cacaagctcgacgcgctgacccgcatcctcgaggttgaagagttcgacggcgtcatcgcc
ttcgtacgcaccaagatggccaccgaggacctcgctgacaagctgaagtcccgcggcttc
caggctgccgcgatcaacggtgacatcccgcagcagcagcgtgaacgcaccgtggacgcg
ctgaaggaaggccgcatcgacatcctggtggccaccgacgtcgccgcccgtggccttgac
gtggagcgcatcagccacgtggtcaactacgacatcccccacgacaccgagtcctacgtc
caccgcatcggccgcaccggccgtgcaggccgttccggcgacgccatcctgttcatgacg
ccgcgcgagaagtacctgctgcgttccatcgagaaggccacccgccagccggtggagcag
atgcacctccccacggccgagaccgtgaacacgctgcgcctgggcaagtttgccgagcgc
atcaccgagaccctcgcgtccgaggatgttgcaccgttccgcgacctgatctcctcctac
gaggaagagcacaacgtcccggcctcggagatcgctgcagcactggccatcatggcgcag
ggcggccagccactcctggtcaaggaactgcccgcagctcccgagttccagaagcgcgaa
cggtccaaggacggctttggctcacgcggcccgacccgcacactgaccgagggcaacgcc
acctaccggatcgccgtcggacgccgccagcgcgtcatgccgggttccatcgttggcgcc
attgccaacgagggcggtatttcctcggcccagatcggcggcatcgacatccgctcggac
cactccctcgtggagcttccggcggacctcagccccgagcagctgcgtgcactgtcccgc
acccggatcggcggcgagctgatccacctcgagctggacaacggccgcaagccctccggt
ggcgccggtgagcgtggcggttaccagggaaaccgtggcggcgaccgcggcgggtactcc
ggcggcggagaccgtggcggcaacttcaagggcaacggcgggttcaagaaggaattccgc
aagaacgacggcgagcggtcctccgctgaccgtggcggccgctccttcagcgaccgttcg
gagcgcagcgtaggcgctgacagcggcgccagccgcggccaggccagcgactcccgcttc
ggcggccacggcgacggtgcacgtaagccgcgccatggcaacgaaggcggacaccgcgac
ttcaaccgcaagggcaagtggtaa
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