Arthrobacter sp. FB24: Arth_3119
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Entry
Arth_3119 CDS
T00421
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
art
Arthrobacter sp. FB24
Brite
KEGG Orthology (KO) [BR:
art00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
art03016
]
Arth_3119
Enzymes [BR:
art01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Arth_3119
Transfer RNA biogenesis [BR:
art03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Arth_3119
Prokaryotic type
tRNA splicing ligases
Arth_3119
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CDCA
Motif
Other DBs
NCBI-ProteinID:
ABK04498
LinkDB
All DBs
Position
complement(3500294..3501460)
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AA seq
388 aa
AA seq
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MERINSRLINWASILDAETREQAVRTSRLPFIYPHLALMPDAHLGKGATVGSVIPTLGAV
IPAAVGVDIGCGMIAVRTQYFLTDLPPDRKRLREAIERVIPLSAGHNNRRITATAEARIA
ELGRLAAKARFDPGQYVAKWELQLGSLGSGNHFIEVCADETDAIWLFLHSGSRGIGNKIA
QHHISVAQRMTREKRIALPDDDLAYLEEGTAEFSRYIDELHWAQRFALLNREEMMDRVIS
QFGTWTGGKVQERERINCHHNFTRRETHYGKAVWVSRKGAIRAETGDPGLIPGSMGTASY
VVAGRGNRMSLNSSPHGAGREYSRTAARKAFSLAELKKAMQGIEFRASEAFIDEIPAAYK
PIDVVMRDAEDLVKVRHRLRQLVNVKGD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
gtggaacgcatcaacagccggctcatcaactgggcttccatcctggacgccgagacgcgg
gagcaggccgtcagaacgtcccggctgcccttcatttatccgcatctggcgctgatgccg
gacgcccatctgggaaagggcgccacggtggggtccgtcatccccaccctgggcgcggtg
attccggcggcggtgggcgtggacatcggctgcggcatgattgcagtcaggacgcagtac
ttcctcacggatctgccgccggaccggaaacggctgcgggaggccattgaacgcgttatc
ccgctgtcggccggacacaacaaccgcaggatcacggccacggccgaagcgcgaatcgcc
gagctggggaggctggccgccaaggccaggtttgatccgggccagtacgtagcgaagtgg
gagctccagcttggctcgctcggatcaggcaaccatttcatcgaggtctgcgcggacgag
acggatgccatttggttgttcctgcactccggctcccgaggtattggcaacaagatcgcg
cagcaccacatcagcgtcgcgcagcgcatgacgcgggagaaacggatcgcgcttcccgac
gacgacctcgcctacctggaagagggcacggccgagttcagccggtacatcgacgagctg
cactgggcccagcggttcgccctgctgaaccgtgaggaaatgatggaccgcgtgatcagc
cagttcggcacctggacaggcggaaaggttcaggaacgggaacggatcaactgccaccac
aacttcacccgccgggaaacccattacgggaaggcggtgtgggtttcgcgcaagggagcc
atccgggccgagacaggggacccgggcctgatcccggggtccatgggcacagcctcgtat
gtggtggccggccgtggcaaccgcatgtcgctgaattcctcgccgcatggtgcgggccgc
gagtattcgcgcacagcggcgcgaaaggcgttctccctggccgagctgaagaaggcgatg
caagggattgagtttcgtgcctcggaggccttcatcgacgagattcccgcggcgtacaag
cccattgacgtcgtcatgcgcgatgcggaggacctggtgaaggtccgccacaggctgcgg
cagctcgtcaacgtcaaaggcgactga
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