Arthrobacter sp. PAMC25284: KY499_05655
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Entry
KY499_05655 CDS
T10986
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
artc Arthrobacter sp. PAMC25284
Pathway
artc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
artc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KY499_05655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
artc03019
]
KY499_05655
Messenger RNA biogenesis [BR:
artc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KY499_05655
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QYF90747
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Position
complement(1200721..1202412)
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AA seq
563 aa
AA seq
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MTQTALPGLVTPPKLAKDTLRIVPLGGLGEIGRNMTVFEIDGKLLIVDCGVLFPEETQPG
VDLILPDFSYIKNRMDDIVAVILTHGHEDHIGAVPYLLRLRQDIPIIGSRLTLALIEAKL
QEHRIKPRTHVVVEGEVEKLGPFECEFVAVNHSIPDALAVFIRTAGGTVLHTGDFKMDQL
PLDGRITDLRHFAKLGEEGVDLFLADSTNADVPGFTTAEKEIGPTLDRLFGQASKRIIVA
SFSSHVHRVQQVLDAAVKHNRKVAFVGRSMVRNMDIASKLGYLDVPPGTVVDIKNIDNLP
DNRVVLMSTGSQGEPMAALSRMANGDHRVVVGEGDTVILASSLIPGNENAVFRIINGLLK
LGADVIHKGNAKVHVSGHAAAGELLYCYNILEPLNAMPVHGETRHLIANGKIALESGVPE
ESILLADNGTVVDLHDHQADIVGQVEVGFVYVDGSSVGEITDADLKDRQTLGDEGFISII
TVIHRATGKVVSGPEIHARGVAEDDSVFDEIIPKINAALEEAVLNRTDHTTHQLQQVVRR
VVGTWVNRKLRRKPMIIPVVLEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaactgcccttcccggccttgtcacgccgccgaagctcgccaaggacaccctg
cggatcgtgccgctcggtggcctgggggagatcggccgcaacatgaccgtcttcgagatc
gacggcaagctcctgatcgttgactgcggcgtcctcttcccggaggaaacccagccgggc
gtcgacctgatcctgcccgacttctcctacatcaagaaccggatggacgatatcgtcgcc
gtcatcctgacgcacggccacgaggaccacatcggtgccgtgccgtacctgctgcggctg
cgacaggacatcccgatcatcggttcgcggctgacgcttgccctgatcgaagcgaagctg
caggaacaccggattaagccgcggacccacgtcgtcgtcgaaggcgaagttgagaagctc
ggccccttcgaatgcgagttcgtcgcggtcaaccactccatccccgacgccctggcggtc
ttcatccgcaccgccggtggcaccgtgctgcacaccggcgacttcaagatggaccaattg
ccgctggacggccggatcactgatctccgccacttcgccaaactgggcgaagagggtgtg
gacctgttcctcgccgattccacgaacgccgatgtaccgggcttcaccacggccgaaaaa
gaaatcggccccaccctggaccgcctcttcgggcaggcctccaagcgcatcatcgtcgcc
tcgttctcctcccacgtgcaccgggtccagcaggtcctcgacgctgcggtcaagcacaac
cgcaaggtcgccttcgtcggccgctccatggtccgcaacatggacatcgcctcaaagctt
ggttacctggacgtgccaccgggcaccgttgttgacatcaagaacatcgacaacctgccg
gacaaccgcgtggtgctgatgtccaccggttcgcagggtgagccaatggcggccctgtcc
cggatggccaacggggaccaccgcgtcgtcgtcggcgaaggcgataccgtcatccttgcc
tccagcctgattcccggcaatgagaatgccgtcttccgcattatcaacggcctgctcaag
ctcggcgcggacgtcatccacaagggcaacgccaaggtccacgtctcgggccacgccgcc
gccggcgagctgctctactgctacaacatcctcgagcccctcaacgcgatgccggtgcac
ggcgagacccggcacctgatcgccaatggcaagatcgccctcgagtccggtgttcccgag
gagagcatcctgctcgcggacaacggcaccgtcgtcgaccttcacgaccaccaggcagac
attgtgggccaggtcgaggtcgggttcgtctacgtggacggctccagcgtgggggaaatc
accgacgccgacctcaaggaccgccagaccctcggcgatgagggcttcatctccatcatc
acggtcatccaccgcgccaccggcaaggtcgtctccgggcccgaaatccatgcccgcggc
gtggccgaggatgattccgtcttcgacgagatcatcccgaagatcaatgccgcgcttgag
gaagccgtccttaaccgcacggaccacacgacgcaccagctgcagcaggttgtccgccgc
gtagtcggcacctgggtcaaccgcaagctccgccgcaagcccatgatcatcccggtggtc
ctggaagcctag
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