Arthrobacter sp. EM1: QI450_10780
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Entry
QI450_10780 CDS
T11381
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
arte Arthrobacter sp. EM1
Brite
KEGG Orthology (KO) [BR:
arte00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arte03019
]
QI450_10780 (hrpA)
Enzymes [BR:
arte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QI450_10780 (hrpA)
Messenger RNA biogenesis [BR:
arte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QI450_10780 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
AAA_23
nSTAND3
PhoH
Motif
Other DBs
NCBI-ProteinID:
WGZ78379
LinkDB
All DBs
Position
2335450..2339478
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AA seq
1342 aa
AA seq
DB search
MTFHISYPAELPVSERREDLMAAIAANQVTIIAGETGSGKTTQIPKMCLELGLGENGLIG
HTQPRRLAARTVAERIAEELGVEIGQEVGFQVRFTGEVGRNTKVKLMTDGILLAEIRRDK
LLRKYNAIIIDEAHERSLNIDFILGYLKRILPQRPDLKIIITSATIDPQRFAKHFGSEDV
PAPIIEVSGRTFPVEIRYRPLSQPAGGATGDDADTASDDELEEDRDPLDAVCDAVDELAQ
EAPGDILIFFSGEREIRDAAEALNGRIQSNRKLAGTEVLPLFARLSLQEQHKVFHPGAKR
RIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRSGRCGR
VSDGIAIRLYSAEDFQSRPPFTDPEILRTNLAAVILQMTAMGVARGPKDVENFPFVEPPD
SRAINDGVALLRELGALSTARAPEETGERAGRRLPAGADGRSGGALTAVGQQLAQLPVDP
RLGRMIVESGKRGCVREVMILAAALTIQDPRERPTDKQQLAAEKHARFRDENSDFTGFLN
LWNYLQEKQQELSSTAFRRLCRAEFINYLRVREWQDLFAQLRQLARPLGISLDNKRLADP
VGNHEGIHISLLSGLLSHVGILDERKREYAGARGSRFAIFPGSALFKKSPTFVMAAELVE
TSRLWARVAAKFDPLWVEQVAPDLVKRSYSEPHWSKKMGSVMAHEKVTLYGVPIIPSRRI
NYGKVDPELCRGLFIRHALVEGDWQTHHKFFHRNRALLHEVEELEARMRRRDILVDDETL
FEFYDARIGKDVVSERHFDKWWKDARQQDPALLDFDQALLISEDADALDDSAYPKTLLHK
GFELPLSYEFHPVAPGSPPNPSDGVTAEVPVLFLNQLDDAAFRWLIPGQRVELVTALIKS
LPKQVRKNFVPAPDVARQAVAALEADFDPAADELEASLELVLRRIRGQVIPPHSWSWDAV
PPHLRVSFRVVDSGGKILEEGKDLSVLQDRLAPATRRAIAESLGATPATTAPRSGIMGHG
TSKNSVARTGTAQAAGTASTTAASGEAAASTGFAEKAALTSWSFGTVQREVRGTVKGHTV
TGYPALVDEGASVALRLFQTSSEQEQAMRGGVIRLLALRVPPPDRYVLEHLNNAEKLTFS
QNPHGSVTALIADCALAAIDKLTPAALPWDEGSFNALYEKVRADLIDTVFTVTAVVERIL
ASTRRIERALKGTTSLALISALNDIKSQLEQLVFPGFVARTGYSQLSQLPRYLAAIEKRL
EKLPTNVARDAQHMAAVQALEDDYDDAASALLPGRRAGTELTQVRWMIEELRVSLFAVEL
GTAYSVSEKRIRAVLNKALAPA
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgacttttcatatttcctaccccgccgagctgcccgtttccgagcgccgcgaggacctg
atggcggccattgcggccaaccaggtgaccatcattgccggcgagaccggctcaggtaag
acgacccagattcccaagatgtgcctggagctgggcctgggcgagaacggcctgatcggt
cacacccagccgcggcggctcgcggcccgcaccgtggccgaacgcatcgcagaggaactc
ggcgtggagatcggccaggaggtcggcttccaggtccggttcacgggcgaggttggccgc
aacaccaaggtcaagcttatgaccgacggcattctgctggcggagatccggcgcgacaag
ctgctgcggaaatacaacgccatcattatcgatgaagcccacgagcgcagcctgaacatc
gacttcatcctcggctacctcaagcggatcctgccgcagcggccggatctgaagatcatc
atcacctcggccaccatcgacccgcagcgcttcgcaaagcacttcggcagcgaggacgta
ccggcgccgatcatcgaggtctccggtcggacgttcccggtcgaaatccgctaccggccg
ctctcccagccggccggcggagccaccggcgatgacgcggacacggcctccgacgatgaa
ctggaggaggaccgtgacccgttggacgccgtctgcgacgccgtcgacgaactcgcgcag
gaagcccccggcgacatcctcatctttttctccggcgagcgtgaaatccgcgacgccgcc
gaggccctcaacggcaggatccagtccaaccggaagctcgccggaaccgaggtgctcccg
ctcttcgcccggctgagcctgcaggaacagcacaaggtcttccaccccggggccaagcgc
cggattgtgctggccaccaacgtcgctgagacctccctgaccgtccccggcatcaaatac
gtcatcgacaccggcaccgcccgcatctcccgctattcgcaccgcaccaaggtccagcgc
ctgccgatcgagcgggtatcccaagcctcggcaaaccagcgttcggggcgctgcggccgt
gtctcggacggcattgccatccggctgtactcggcggaggactttcagtcccgcccgccg
ttcaccgatccggaaatcctgcgcaccaacctcgccgcagtcatcctgcagatgaccgct
atgggagtcgcccgcgggccgaaggatgtcgaaaacttcccgtttgtggagccgccggac
tcccgcgccatcaacgacggcgtcgccctcctgcgcgagctcggtgccctgagcacagca
cgtgcgccggaggagacgggtgagcgcgcgggccgccggctgccggccggtgccgacggg
aggagcggcggggccctgaccgccgtcgggcagcagcttgcccagctgccggtggacccg
aggctcggccggatgatcgtcgagtccggcaagcgcggctgcgtccgcgaggtcatgatc
cttgccgcggccctcaccatccaggatccgcgcgagcgcccgaccgacaagcagcagctc
gctgcggagaaacacgcgcggttccgggatgagaactcggacttcaccgggttcctgaat
ctctggaactatctccaggaaaagcagcaggagctctcctccaccgcgttccgccggctc
tgccgtgccgagttcatcaactacctgcgtgtccgcgagtggcaggacctcttcgcccag
ctgcgccagctggcccggccgctcggcatcagcctggacaacaagcgcctcgccgatccg
gtgggcaaccatgagggcatccacatcagcctgctctcgggcctgctgagccatgttggc
atccttgacgagcgcaagcgcgaatacgcaggcgcccgcggcagccgcttcgcgattttc
ccgggatcggccttgttcaagaagtcccccaccttcgtgatggccgctgagctggtggag
acgagcaggctgtgggcgcgggtggccgcgaagttcgatcccctctgggtggagcaggta
gcgccggacttggtcaagcgcagctacagcgagccgcattggtccaaaaagatgggttcg
gtgatggcccatgaaaaggtcacgctgtacggcgtgcccatcatcccgagccgccggatc
aactacggcaaggtggaccccgagctctgccgggggctgttcatccgccatgccctcgtc
gagggtgactggcagacccaccacaagttcttccaccgcaaccgggccctgctgcacgag
gtcgaggagctggaggcacggatgcggcgccgggacatcctggtggacgacgagacgctc
ttcgagttctacgacgcccggatcggcaaggacgttgtctccgagcggcacttcgacaag
tggtggaaggacgcgcggcagcaggacccggcgctgctcgatttcgaccaggcgttgctg
atcagtgaggacgcagatgccctggatgactcggcctacccgaagaccctgctgcacaag
ggctttgagctgccgctgagctatgagttccatcccgtcgcccccgggtcgccgcccaac
ccgtccgacggcgtcaccgccgaggtgcccgtgctgttcctgaaccagctggacgacgcg
gcgttccgctggctcattccgggccagcgcgtggagctggtcaccgccctgatcaagtcg
ctgcccaagcaggtgcgtaagaacttcgtgccggcaccggacgtcgcccggcaggccgtc
gcagccctcgaggcggacttcgatccggccgccgacgagctggaggcctccctcgagctg
gtcctgcgccggatccgcggccaggtcatcccgccgcattcctggagctgggacgctgtt
cccccgcacctgcgggtcagcttccgagtggtggattccggcggaaagatacttgaggaa
ggcaaggacctttcagtgctgcaggatcggctggcaccggctacccgccgcgccatcgcg
gagtcgctgggcgccacgcccgcaacaacggcgccgcggtccggcattatgggccacggc
acgtccaagaactcggtggcccgcaccgggacagcgcaggctgccggcacggcgtctaca
actgcggcctccggggaggccgcagcctcgaccggtttcgccgagaaggcggcactgacc
tcctggtccttcggaacagtgcagcgcgaggtccggggcaccgtgaagggccacaccgtc
accggctaccctgcgctcgtggatgagggagcgtcggtggcgctccggcttttccagacc
agctccgaacaagagcaggccatgcgcggcggcgtcatccgcctgctcgcactgagggtg
ccgccgccggaccgctacgtcctggaacacctgaacaacgcggaaaagctgacgttcagc
caaaacccgcacggctccgtgacggcattgattgccgactgcgccctcgccgccatcgac
aagctcacccctgccgctctgccgtgggacgaaggatcgttcaacgccctgtacgagaaa
gtccgggcggacctcatcgatacggtctttacggttaccgccgtcgtggagcggattctc
gccagcacccggcggatcgagcgggcgctcaaaggcacaacgagcctggccctgatcagc
gcactcaacgacatcaagagccagctggagcagcttgtgtttcccggttttgtggcacgc
accggctacagccagctcagccagctgccgcgctacctcgcggcgatcgagaagcgcctc
gagaaactcccaacgaacgtcgcgcgggacgcccagcacatggccgccgtccaggcactg
gaggacgactacgacgacgccgcgtcggcactgctgccgggcaggcgggccgggaccgag
ttaacccaggtccgctggatgatcgaggagctccgggtgagcctcttcgccgtcgagctg
gggacagcctattccgtctcggaaaagcggatccgcgctgtgctcaacaaggcgctggca
cctgcctga
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