Arthrobacter sp. PGP41: C3B78_12695
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Entry
C3B78_12695 CDS
T05450
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
arth
Arthrobacter sp. PGP41
Brite
KEGG Orthology (KO) [BR:
arth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arth03019
]
C3B78_12695 (hrpA)
Enzymes [BR:
arth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C3B78_12695 (hrpA)
Messenger RNA biogenesis [BR:
arth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C3B78_12695 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
AAA_23
nSTAND3
PhoH
Motif
Other DBs
NCBI-ProteinID:
AUZ35228
UniProt:
A0A2L0QZZ2
LinkDB
All DBs
Position
2781860..2785843
Genome browser
AA seq
1327 aa
AA seq
DB search
MTLHISYPAELPVSERREDLMAAIAANQVTIIAGETGSGKTTQIPKMCLELGLGENGLIG
HTQPRRLAARTVAERIAEELGVDIGQEVGFQVRFTGEVSRATKVKLMTDGILLAEIQRDK
LLRKYNAIIIDEAHERSLNIDFILGYLKRILPQRPDLKVIITSATIDPQRFADHFGTPEE
PAPIVEVSGRTYPVEIRYRPISQPPGGAGPDDENGSDDELEEDRDPLDAVCDAVDELALE
APGDILVFFSGEREIRDAAEALQARIQSNRRLAGTEVLPLFARLSLQEQHKVFHPGSKRR
IVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRSGRCGRV
SDGIAIRLYSEEDFESRPLYTDPEILRTNLAAVILQMTAMGVARGPKDVENFPFVEPPET
RAINDGVTLLRELGALAAARPQNGTDGAKSGGGLTAVGQKLAQLPVDPRLGRMIVEAGKR
GCVREVMVLAAALTIQDPRERPTDKQQLAAEKHNRFKDENSDFTGFLNLWNYLQEKQQEL
SSSAFRRMCRAEFINYLRVREWQDLFAQLRQLARPLGISLDNKRLADPVGNHEGIHISLL
SGLLSHIGILDERKREYAGARGSRFAIFPGSALFKRSPTFVMAAELVETSRLWARVAAKF
DPVWAEQVAPDLVKRSYSEPHWSTRQGAVMAYEKVTLYGVPIIAQRRINYGRVDPVVARE
LFIRHALVEGDWKTHHKFFHRNRALLNEVEELEARMRRRDLLVDDETLFEFYDARVGPDV
VSERHFDRWWKEARQKNPDLLDYDKSLLLSDDADDLDEAAYPKTWLHKGFELPLSYEFHP
VAPGSPPNPSDGVTAEVPVLFLNQLDDKAFRWLIPGQRVELVTALIKSLPKQIRKNFVPA
PDVARQAVAVLESDFDPAVDELEPSLELALRRIRGHVIPPGSWNWDAVPPHLRVSFKVVD
SRGKVLDEGKDLAALQEKLAPATRRAIAESLGATPASTAPGAGNGRNPARGSGKTHDAGS
SAALQPAEVPGAAGPTGFREQDGLTEWTVGTIQRQVSSTVNGHTVTGYPALVDQGTSVSL
RVFQTAEEQQEAMRGGVVRLLALRVPAPDRYVLEHLSNTEKLTFSQNPHGSVASLIADCA
LAAIDKLTPAELPWDQESFDRLYEVVRAELIDTVFSVTAVVERILASTRRIEKQLKGTTS
LALISALNDIKSQLEQLVYPGFVARTGYAQLSQLPRYLSAIEKRLERLPGNVQRDALNMA
VVQRLEDDYDDAVSALLPGRKAGPELTQVRWMLEELRVSLFAVELGTAYSVSEKRIRAVL
NKALAPA
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgacacttcacatctcctaccccgccgagctgccggtctccgaacggcgcgaagacctg
atggcagccatagcggcgaaccaggtcaccatcatcgccggcgagaccggttccggtaag
accacccagatacccaagatgtgcctcgaacttggcctgggtgaaaacgggctgatcggc
cacacccagccgcgccggctcgcagcccgcacggtggccgagcgcatcgccgaggaactg
ggcgtggacatcggccaggaggtgggcttccaggtccgcttcacaggtgaggtcagccgc
gccacgaaggtcaagctgatgaccgacggcatcctgcttgcagaaatccagcgggacaaa
ctgctgcgcaagtacaacgcgatcatcatcgacgaggcccacgaacgaagcctcaatatc
gacttcatcctgggctacctcaagcggatcctgccgcagcggccggacctcaaggtgatc
atcacctccgccaccatcgacccccagcgctttgccgaccatttcggcacaccggaagaa
cccgcacccattgtcgaggtctccgggcggacctacccggtggaaatccggtaccgcccg
atctcccagccaccgggcggagccgggcctgacgacgagaacggttccgatgacgaactc
gaggaagaccgcgatccgcttgacgccgtgtgtgacgccgtcgacgaacttgccctcgaa
gcgccgggcgacatcctggtgttcttctccggcgagcgcgaaatccgcgacgctgccgaa
gcgctgcaggcccgcatccagtccaaccgccggctggccggaaccgaagtccttccgctc
ttcgcacggctgagcctgcaggaacagcacaaggtcttccaccccggcagcaagcgcagg
attgtccttgccaccaacgtcgccgaaacctcgctcacggttccaggcatcaagtacgtc
atcgacaccggcaccgcccgcatctcccggtactcgcaccgcaccaaggtccagcggctg
ccgatcgagcgggtctcccaggcttcggccaaccagcggtccggccgctgcggccgcgtc
tcggacggcatcgccatccgcctgtactccgaggaagacttcgagtcccgccccctctac
acggacccggagatcctgcggaccaacctcgctgccgttatcctgcagatgaccgccatg
ggagtggcgcgcggccccaaggacgtcgaaaacttccccttcgtggagccgcctgaaacg
cgggcaatcaacgacggcgtcacgctgctccgcgaactcggcgccctcgctgccgcccgg
ccgcagaacggcacggacggggcgaaaagcggcggcgggctcaccgccgtcgggcagaag
ctcgcccagctgccggtggacccccgcctgggccggatgatcgtggaggcgggcaaacgc
ggctgcgtccgcgaggtgatggtcctggccgcggccctcaccatccaggacccgcgcgag
cgtccaacagacaagcagcaactcgcggcggaaaagcacaaccggttcaaggacgagaac
tcggacttcaccggcttccttaacctctggaactacctacaggagaagcagcaggagctc
tcgtcgtccgccttccgccggatgtgccgggccgagttcatcaattacctccgggtccgg
gagtggcaggacctgtttgcccagctgcgccagctggcccggcccctgggcatcagcctc
gacaacaagcggcttgccgaccccgtgggcaaccacgagggcatccacatcagccttctt
tccgggctcctgagccacatcggcatccttgacgaacgcaagcgcgagtatgcaggtgcc
cggggcagccggtttgcgatcttccccggctcggccctcttcaagaggtcacccacgttc
gtgatggcggcggaactcgtggagaccagccgcctctgggcgagggtggcggcgaagttc
gatcctgtgtgggccgaacaggtagccccggacctggtgaagcgcagctacagcgaaccg
cactggtccacccgccagggcgccgtgatggcgtacgagaaggtcaccctgtacggcgtg
cccatcatcgcccagcgcaggatcaactacggaagggttgaccccgtcgtcgcccgggaa
ctcttcatcaggcacgccctggtggagggtgactggaaaacccaccacaagttcttccac
cgcaatcgcgcgctcctcaatgaagttgaggaactggaggccaggatgcgccgtcgcgac
ctcttggtggatgacgagacgctgtttgagttctacgacgcgcgggtgggaccggacgtt
gtgtccgaacggcacttcgacagatggtggaaggaggcccggcagaagaaccccgacctc
cttgactacgacaagtccctcctcctcagcgacgacgcggacgacctcgacgaagccgcc
tatcccaagacctggctgcataagggctttgagctgccgttgagctacgagttccacccg
gtggctcccggctcgccgcccaacccgtccgacggcgtcacggccgaggtgccggtgctg
ttcctgaaccaactggatgacaaggctttccgctggctcataccggggcagcgcgttgag
ctggtgacggccctgatcaagtccttgccgaagcagatccgcaagaatttcgttcccgcc
ccggacgttgcccggcaggcagtggcagtcctggaatccgatttcgatcccgccgtggac
gagctcgaaccttcccttgagcttgccctgcgccggatccgcggacacgtcatcccgccg
ggatcctggaactgggacgcggtgcccccgcacctgcgggtgagcttcaaggtggtggac
agcaggggcaaagtcctggacgagggcaaggacctcgccgcactccaggagaagctggct
ccggcaacgcggcgggccatcgcagagtcgctgggggccacgcccgcctccaccgcgccc
ggcgccggcaacggcaggaatcctgcgcgggggtcagggaaaacgcacgacgccggatcc
tccgcagcgctgcagccagccgaagtgccgggggccgcaggcccaaccggcttccgggaa
caggacgggctcaccgaatggacggtcggaacgatccagcgccaggtcagcagcacggtc
aacggccacacggtgacgggttacccggcgctggtggaccagggcacgtcggtgtcactg
cgtgtcttccagactgccgaggaacagcaggaggcaatgcgcggcggggtggtcaggctg
ctggccctgcgcgttccggcacctgaccggtatgtgctggagcacctgagcaacacggag
aaactcacgttcagccaaaacccgcacggctcggtcgcaagcctgatcgctgactgcgcc
ctggccgccatcgacaagctcacgcccgcggaactgccctgggaccaggagtcctttgac
cggctgtacgaggtggtccgggccgaactgatcgacacggtgttcagcgtcaccgcagtg
gtggaacgaatcctggccagcacccggcggatcgaaaaacagctgaagggcaccaccagc
ctggcgctgatcagtgccctcaacgacatcaagagccagctggaacagttggtctacccc
ggctttgtggcacggacgggctacgcccagctgagccagctcccccggtacctttcggcc
attgaaaagaggctggaacgccttccgggcaacgtccagcgcgacgccctgaacatggcc
gtggtacagcggctcgaggacgactacgacgacgccgtgtcggccctgctccccggacgc
aaggcaggccctgagttaacccaggtgcgctggatgcttgaggagctccgggtgagcctc
ttcgccgtcgaactcgggacagcgtattcggtgtcggagaagaggatccgcgccgtgctc
aacaaggctctggcgccggcctag
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