Arthrobacter sp. PGP41: C3B78_14540
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Entry
C3B78_14540 CDS
T05450
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
arth
Arthrobacter sp. PGP41
Pathway
arth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3B78_14540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arth03019
]
C3B78_14540
03009 Ribosome biogenesis [BR:
arth03009
]
C3B78_14540
Enzymes [BR:
arth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3B78_14540
Messenger RNA biogenesis [BR:
arth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3B78_14540
Ribosome biogenesis [BR:
arth03009
]
Prokaryotic type
rRNA helicases
C3B78_14540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AUZ35548
UniProt:
A0A2L0R0V0
LinkDB
All DBs
Position
complement(3176587..3178722)
Genome browser
AA seq
711 aa
AA seq
DB search
MPENHNDAAAQAATASIEFTEPAAPAAEAATVPAEAPAEAPAAPAAQAEEAPAAAAPAAQ
AEEDEEEGVKFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKT
AAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYG
GSAYGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVE
QIFQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPH
KLDAMTRILEVEEFDGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDAL
KEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTP
REKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVAPFRDLIASYE
EEHNVPASEIAAALAVMAQGGQPLLVKELPAAPEFQKRERSKDGFGSRGPTRTLTEGNAT
YRIAVGRRQRVMPGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRT
RIGGELIHLELDNGRKPAGERGSYQGNRGGDRGGNFKGAGGFKKDFRKNDGERSSADRGG
RSYSERSFSADSGASRGQASDSRFGGHGDGSRKPRHGNEGGQRDFNRKGKW
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaatcacaacgacgccgccgctcaagcagcaaccgccagcatcgaattcacc
gagcccgctgctcctgcagctgaggccgcaacggttcccgccgaagctcctgctgaagca
ccggccgctcccgccgcccaggctgaggaggctcctgccgccgccgctcccgccgcccag
gctgaggaagacgaagaagaaggcgtcaagttcgccgacctcggcattgacggccgcgtc
ctcgccgccctccaggacgtcggctacgagaagccgtcccccatccaggcagcaaccatc
ccgctgctgctcgaaggccgcgacgtcgtgggcctcgcccagaccggcaccggtaagact
gcagcattcgcagtaccggcactctcccgcctggccgagctccacgacctcaacggcccg
tcccggaagacccaggcactggtcctggctcccacccgcgagctggccctccaggtagcc
gaggccttcacctcgtacgccaagcacatcgatgacttcaccgtcctccccgtctacggc
ggctccgcctacggcccccagctcgccggcctgcgccgcggcgcccaggttgtcgtcggt
acccccggccgcgtgatcgaccacatctccaagggttccctggacctgtccgaactccag
tacctggtgctggacgaggccgacgaaatgctgcgcatgggcttcgccgaagacgtggag
cagatcttccagcagaccccgtcggaccgccaggttgcactgttctccgccaccatgccg
agccagatccgccgcatgtccaagcagtacctgaacaacccggccgagatctccgtcaag
tccaagaccaccaccggcgccaacacccgccagcggtacctgcaggtcatgggcccgcac
aagctcgacgccatgacccgcatcctcgaggtggaagagttcgacggcgtcatcgccttc
gtgcgcaccaagatggctaccgaggacctggctgacaagctgaagtcccgcggtttccag
gccgccgcgatcaacggtgacatcccgcagcagcagcgcgagcgcactgtggacgcgctg
aaggaaggccgcatcgacatcctcgtggccaccgacgtcgccgcccgtggccttgacgtg
gagcgcatcagccacgtcatcaactacgacatcccgcacgacaccgagtcctacgtgcac
cgcatcggccgcaccggccgtgcgggccgttccggtgacgccatcctgttcatgacgccg
cgggagaagtacctgctgcgttccatcgagaaggcaacgcgccagccggtggagcagatg
cacctgcccaccgccgagaccgtgaacaccctgcgcctgggcaagttcgccgagcgcatc
acggaaaccctcgcctccgaggacgtggccccgttccgcgacctcatcgcctcctacgag
gaagagcacaacgtgcctgcctcggagatcgctgctgcgcttgccgtcatggcccagggc
gggcagccgctgctggtgaaggaactgcccgcagctcccgagttccagaagcgcgagcgc
tccaaggacggcttcggctcccgcggaccgacccgcacgctcaccgagggcaacgccacc
taccggatcgccgtgggacgccgccagcgcgtcatgcccggttccatcgtgggcgcgatt
gccaacgagggcggcatctcctcggcacagatcggcggcatcgatatccgctcggaccac
tccctcgtggagctcccggcggacctgagccccgagcagctgcgtgccctgtcccgcacc
cggatcggcggcgagctgatccacctcgagctggacaacggccgcaagcctgccggcgag
cgcggctcctaccaaggcaaccgcggcggtgaccggggaggcaacttcaagggcgccggc
gggttcaagaaagacttccgcaagaacgacggcgagcgttcctccgcggaccgcggcggc
cgctcctacagcgagcgctccttcagcgctgacagcggtgccagccgcggccaggccagt
gactcccgcttcggcggccacggtgacggctcccgcaagccccgccacggcaacgagggc
ggccagcgagacttcaaccgcaagggcaagtggtaa
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