Arthrobacter sp. PGP41: C3B78_14850
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Entry
C3B78_14850 CDS
T05450
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
arth
Arthrobacter sp. PGP41
Brite
KEGG Orthology (KO) [BR:
arth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arth03016
]
C3B78_14850
Enzymes [BR:
arth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C3B78_14850
Transfer RNA biogenesis [BR:
arth03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C3B78_14850
Prokaryotic type
tRNA splicing ligases
C3B78_14850
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AUZ35603
LinkDB
All DBs
Position
complement(3241468..3242634)
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AA seq
388 aa
AA seq
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METISPKLLNWASILDEKTREQAVMTSQLPFIYPHLALMPDAHLGKGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVRTQYGLKDLPKDRKTLREDIERAIPLSAGHNNRTVLPTAEPRIA
ELKRLAAKAGFNPGQYVEKWELQLGSLGSGNHFIEVCADESDAVWLFLHSGSRGIGNKIA
QHHIGIARRVVTKSRVHLPDPDLAYLEEGTPQFERYIAELRWAQHFALLNREEMMDRVTT
QFGHWVRGRVRELERINCHHNFTQQETHYGKSVWVSRKGAIKAGPGDPGLIPGSMGTASY
VVEGRGNPASLNSSPHGAGREHSRNAARKAFSLEELKKAMRGIEFRASEAFIDEIPAAYK
PIDQVMHDAADLVSVRHKLRQLVNVKGN
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggagaccatcagtccgaagcttctgaactgggcttcgatcctggatgaaaagacccgc
gagcaggccgtgatgacgtcgcagctgcccttcatctatccgcaccttgccctgatgccg
gacgcgcacctgggcaagggtgccaccgtgggctcggtcatccccacgctcggcgcgatc
atccctgcggcggtgggggtggacatcgggtgcggcatgatcgcggtccggacgcagtat
gggctcaaggacctccccaaggaccggaagacgctgcgcgaggacatcgaacgcgccatc
ccgctttccgcggggcacaacaaccggacagtgcttcccacagcggagccccggatcgcg
gagctgaaaaggctggccgcgaaagccggcttcaatcccggtcagtacgtcgaaaaatgg
gagctgcagctgggctccctgggctcgggcaaccacttcattgaggtctgcgcagacgaa
tccgacgcggtctggctcttcctgcactccggctcgcgcggcatcggcaacaagatcgcc
cagcaccacatcggcatcgcccggcgcgtggtgacgaaaagccgggtccacctcccggac
ccggaccttgcatacctcgaggagggcacgccccagttcgagaggtacatcgcggagctg
cgctgggcccaacacttcgcgctgctgaaccgcgaggagatgatggaccgcgttaccacg
caattcggccattgggtgcgcggccgggtgcgcgagctggaacggatcaactgccaccac
aacttcacccagcaggagacgcactacggcaagtcggtctgggtgtcccgcaagggcgcc
atcaaagccgggcccggcgatcctggactcattcccgggtccatgggaacggcgtcttac
gtggtggaaggccgcggcaaccccgcatcgctgaactcctcgccgcacggggcgggccgt
gagcactcgcgcaacgccgcgcgcaaggcgttttccctggaggagctgaagaaggccatg
cgggggattgagttccgggcgtcggaggccttcattgacgagattcccgcagcctacaaa
cccattgaccaggtgatgcatgacgccgcggacctggtctcggtgcggcacaagctgcgg
cagctggtcaatgtgaagggcaactga
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