Arthrobacter sp. NyZ413: ABCW42_12625
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Entry
ABCW42_12625 CDS
T11382
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
artn Arthrobacter sp. NyZ413
Pathway
artn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
artn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABCW42_12625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
artn03019
]
ABCW42_12625
03009 Ribosome biogenesis [BR:
artn03009
]
ABCW42_12625
Enzymes [BR:
artn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABCW42_12625
Messenger RNA biogenesis [BR:
artn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABCW42_12625
Ribosome biogenesis [BR:
artn03009
]
Prokaryotic type
rRNA processing factors
ABCW42_12625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XQZ26897
LinkDB
All DBs
Position
complement(2714853..2718125)
Genome browser
AA seq
1090 aa
AA seq
DB search
MDNEQVVAAAEDAAPEAAPETPKKATRTRRKAAPKAAAEAPGEAPDAGADAPSAGQVADA
TAPEAPKAPVRRSRARKKVDAEPLPGFAEETSPEGSGDAAQAAAVEPETPQTEAAPEKPV
RRRRTTKAAAAEPAEEVPAEPAAEEAPAEEPSVAVAEPVTEEEAEELAENAEPAVAGNAE
PAAAGPAASLFLEPGSITSMLFQAPDLSTVVRPAVVDEESEGGERPGDDNELDEGGSRRR
RRSRGRRGRRGSDRDEVPGEEASVEGEENGEAEAEEALEEGVTSRRRRRRRRGDQDLELT
GGGDDDPPNTVTRVRAPRAHVESTGPDRVTSVKGSTRLEAKKQRRRESRETGRRRQVITE
AEFLARRESVDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLP
SMEAAFVDIGRGRNAVLYAGEVNWDTVTLEGKPRRIENALKSGDSVLVQVTKDPVGHKGA
RLTSQISLPGRYLVYVPGGSMTGISRKLPDVERNRLKRILKDRLPENAGVIVRTAAEGAS
EEELTHDINRLRAQWEGIESQSTSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGD
EAWDTIEAYVTYVAPDLVGRLEKWTSEQDIFSAWRVDEQIHKALERKVFLPSGGSLVIDR
TEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLES
NRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEVCAGRGVVT
HDEPVEHRRANVLAAEHHHPRAESQPAGRTEPRKRRRSRGSGQGSSEAPVTTAGAVHVEP
TDPGRQAATRAALATIAAAAHAAHVHDDELRHAAELAAGEATAEESGAAPVQAPAATPGS
SAGGAGSSGGQEAAAPSSSPFGIEERVKPVLRFGGEEVALPFVHHPEPQAAGTPTMSLDL
LAKAFAGLGHAPEDETPAGEGPEQAAPEAETSGSKPSEGEARAEEAPAPGPAVSNGSAES
APRSRRARRNRSASRAQGAANATDVEHHEASAAASGGSAHEAKVPVEGSAKPTSTEEPII
LGVGVPKSEL
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggataatgagcaagttgtagccgccgccgaagacgcggcgccggaagcagccccggag
acgccgaagaaggccacccgcacccgccgcaaggccgctccgaaagctgctgcggaggca
cccggggaagcgcccgacgccggagctgacgccccgtccgcagggcaggtcgccgacgca
acggctcctgaagcgcccaaggcgcccgtccggcgcagccgggcccgcaagaaggtcgac
gccgaaccgttgcctggtttcgctgaagaaacttcccctgaaggttccggggacgccgcg
caggctgccgccgtcgaacccgaaaccccgcaaacggaagctgcacccgaaaagccggtg
cggcgccgtcgtacgacgaaagcggcggcagccgaaccagcggaggaagtccctgctgaa
cccgcagccgaagaagcacccgccgaagaaccttcagtggcagtcgcggaaccggtcact
gaagaagaggccgaagagctggccgagaatgctgagccggccgtcgctgggaacgccgag
ccagctgccgccggccctgccgcgtcgctcttcctggaaccgggctccattacctccatg
cttttccaggctccggacttgagcacggttgtgcgccctgccgttgtcgatgaagaatcc
gagggcggcgaacggcctggcgatgacaacgagctggatgagggcggaagtcgccgtcgg
cgtcgcagccgcgggcggcgtggccgccgtgggtccgatcgcgatgaagttcccggtgaa
gaggcctctgtcgagggtgaagaaaacggggaagccgaggccgaggaagccctggaagaa
ggcgtgacctcgcgtcgccgcaggcggcgtcgtcgcggcgaccaggacctcgagctcacc
ggcggcggagacgacgatccgcccaacactgtgacccgcgtccgcgctccccgcgcgcac
gtggagtccacgggcccggatcgggtcacgagcgtcaagggctccacccgccttgaagcg
aagaagcagcgccggcgtgaatcccgggagaccgggcgtcgccgtcaagtgatcaccgaa
gccgagttcctggcccgccgcgaatccgtggaccggcagatgatcgtgcgccagcgtgac
gacaggatccagatcggggtcctggaagatggcgtgctggccgaacacttcgtgtccaag
acgcagcaggactccttgatcggcaacgtttacctgggcaaggtccaaaacgtcctgccg
tccatggaagccgctttcgtggatatcggacgcggccgcaatgcggtgctgtacgccggt
gaagtcaattgggacaccgtgacgctggaaggcaagccgcgccgcatcgaaaacgccctg
aagtccggcgattcggtgctcgtgcaggtcaccaaggacccggtaggccacaaaggcgcc
cgcttgacgagccagatttcccttccgggacgctacctcgtctacgttcccggcgggtcc
atgaccggcatctcgcgcaagctgcccgacgtcgagaggaaccgcctgaagcggatcctc
aaggaccgccttcccgaaaacgccggtgtcattgtccgcaccgctgccgagggcgcttcc
gaggaagagctgactcatgacatcaaccgcctgcgcgcccagtgggaaggcatcgagagc
cagtccacgtccacgaagatccttgctccggaacttttgtacggcgaaccggacctcacc
atcaaggttgtccgcgacgtcttcaacgaggacttctccaagctcatcgtctcgggcgat
gaggcgtgggacaccatcgaagcctatgtgacctatgtggctccggacctggtggggcgc
ctcgaaaagtggacgtccgagcaggacatcttctcggcttggcgcgtggatgagcagatc
cacaaggccctggagcggaaggttttcctgccttccggcggttcgctcgtgatcgaccgc
accgaggccatgaccgttgttgacgtgaacacgggcaagttcaccggcagcggcggcaac
cttgaagagaccgtcaccaagaacaacctcgaagcggcggaggaagtcgtccggcaactg
cgcctgcgcgacatcggcggaatcatcgtcatcgacttcatcgacatggtcctcgagtcc
aaccgcgacctcgtgctgcggcgcctggtcgaatgccttggccgggaccgcaccaagcac
caggtcgccgaagtgacctcgcttggcctggtgcagatgacccgtaagcggatgggcacc
gggctgctcgaagtcttcggcgagcagtgcgaagtgtgtgcagggcgcggtgtcgtcacc
cacgacgagcccgtggagcatcgccgggccaacgttttggccgccgagcaccaccaccca
cgcgccgaatcccagccggcaggccgcactgaaccgcggaagcgccgccgcagcaggggg
tcggggcagggctcgtccgaggccccggtaaccactgcgggtgccgtccatgtcgaaccg
acggatcccggccgccaggccgccacccgtgcggcccttgccaccattgcggccgcggcc
catgcggcacacgtgcacgacgacgagctgcggcatgccgcggaactcgccgcgggcgag
gcaaccgcggaagagtccggcgcagcgcccgtccaggctccggccgcgacgccgggttcg
tccgcgggtggggccgggtcctccggtggacaggaagccgctgctccttcgtcaagcccg
ttcggcatcgaggaacgcgtgaagcccgtgttgcggtttggtggcgaagaagtcgccttg
cccttcgtccaccacccggagccccaggctgcgggcactccgacgatgagcctggacctg
ctggcgaaggcgtttgccggcctcggccatgccccggaagacgaaaccccggcaggggaa
ggtcccgaacaggctgccccggaagcggaaacatcgggaagcaagccttccgagggcgag
gctcgcgcggaggaagctcccgctcctgggcctgctgtgtcaaacgggtccgcggagtct
gcaccgcgcagccgcagggcacgccgcaaccgtagcgccagccgggcgcagggcgcggcc
aacgccacggatgtcgaacaccatgaggcctccgcggctgcgtcaggcggctccgcccac
gaggccaaggtccctgttgaaggatccgccaagcccacgtcgacagaggaaccgatcatc
cttggcgtcggcgtgccgaagtccgagctctga
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