Arthrobacter sp. OVS8: PJ267_12705
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Entry
PJ267_12705 CDS
T10749
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arto Arthrobacter sp. OVS8
Brite
KEGG Orthology (KO) [BR:
arto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PJ267_12705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arto03400
]
PJ267_12705
Enzymes [BR:
arto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PJ267_12705
DNA repair and recombination proteins [BR:
arto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PJ267_12705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WCI07665
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Position
2534072..2536609
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AA seq
845 aa
AA seq
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MAETTPAGGRERVRVAGREMVVTNLDKVMYPETGTTKADVLAYYAAVAPVLIPAAANRPA
TRKRWVHGVGTADAPGEMFFQKNLDHSTPGWVPRASITHKDRTIQYPLVNDPATLAWLAQ
IAALEIHVPQWRVDSHGNQMPPDRLVLDLDPGEGAGLAECVEVAKLARTILQDVGLEPVP
VTSGSKGIHLYAALDGTQSSEQISEFAHELARSLEADHPELAVSDMKKRLRTGKVLVDWS
QNSAAKTTIVPYSLRGRLRPTVAAPRTWRELSSPSLHQLDYQEVLQRVKDGKDPFAAISG
GKRKGHEPAEHSQGQRSDGPGDGGHADPRLESYRTKRDSSATPEPFTAERHRAGTEGADP
DGGSLREAFVIQEHHASRLHFDLRLERDGVLVSWALPKGVPTSKTKNHLAVQTEDHPLDY
LDFEGTIPKGQYGAGTMSIWDRGYYEVEKWIAGKEVIATLTGQDDGGLGGARRFALIHTG
RGDDQWLIHLMDPLAAKAAKKAQAAPLPDKEADATTAPVGDQPAALVPEDFQPMLASAGT
ISDLPDKDWQFELKWDGVRALIIGDATTIRLISRNGNDMSAAYPELTDRACWPEQDFIAD
GEIIAVGPSGRPDFGLLQGRMKLTRAADVAKARASTPVRLMLFDLLAEHGEDLRRLPLSK
RRVRLEAFFTPTDCPVELSGLIDGDVRHILESAEELGLEGVMAKRTDGRYVGQRSRSWLK
LKFERTQEVVVGGWRPGKGERGQSVGSLLLGIPDGSRLRYVGRVGSGFSARELLELRQQL
DALPRKTSPFSDVPAADAADAHWVSPRLVGEVTYGEWTGSGKLRHPVWRGWRLDKKPEDV
VVEDG
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
ttggctgaaaccacgccggccggaggcagggagcgtgtccgggttgccggccgcgaaatg
gttgtcaccaacctggacaaggtcatgtatccggagacgggcaccaccaaggccgacgtc
ctggcgtactacgccgcggtggcgccggtcctgattccggctgcggcgaaccgcccggcc
acccggaaacgctgggtgcacggcgtcgggacggccgatgcccccggcgagatgttcttc
cagaagaacctggaccattcgacgccggggtgggtgccgcgggcatccatcacccacaag
gaccgcaccatccagtacccgctggtcaacgatccggccaccctggcctggctcgcccag
atcgcggcccttgagatccacgtcccgcagtggcgggtggattcacacggcaaccagatg
cctccggaccggctggtgctggatctggatcccggcgaaggggccgggctggccgaatgc
gttgaggtggcgaagctcgcccgcaccatcctgcaggacgtgggcctggagcccgtaccc
gtgaccagcgggagcaagggcatccacctgtacgccgcgctcgacggcacacagagctcg
gagcagatctccgagttcgcccacgaactggcacgctcactggaggccgatcatccggag
ctcgccgtgagtgacatgaagaagaggctgcgcaccggaaaggtcctggtggactggagc
cagaacagcgccgccaagaccacgatcgtcccctattccttgcggggccggctccggccc
acggtggcggcgccccggacctggcgcgaactcagctcgccgtccctgcaccagctcgac
taccaggaggtcctgcagcgggtgaaggacggcaaggatcccttcgccgccatttcgggt
gggaaaagaaagggtcacgagcctgcggaacactcccaaggccagcgctcggatgggccc
ggagacggcggccatgccgacccccggctggagtcgtaccgcaccaaacgcgattcgtcg
gccaccccggaaccgttcacggccgagcggcaccgtgcaggcacggaaggcgcggacccc
gacggcggctctctcagggaggcgtttgtcatccaggaacaccatgccagccgactgcac
ttcgacctccgtctggagcgcgacggcgtgctggtgtcctgggcgctgcccaagggtgtc
cccacgtccaagacgaagaaccatcttgcggtccagaccgaggaccatccgctggactac
ctggacttcgaaggcaccatccccaaaggccagtacggcgccgggaccatgagcatctgg
gaccgcgggtactacgaggtggagaagtggatcgcgggcaaggaggtcattgccaccctc
accggccaggacgacggagggctgggcggcgcccgcaggttcgccctgatccacaccggc
cggggcgacgaccagtggctcatccacctgatggaccccctcgccgcgaaggccgcgaag
aaggcgcaggctgccccgctgccggacaaagaagcggatgccaccacagctccggtcggt
gatcagcccgccgccctggttccggaggatttccagccgatgctcgccagcgccgggacc
atttccgacctcccggacaaggactggcagtttgagctcaagtgggacggagtacgggcc
ctgatcatcggggatgcgacgacgatccgtttgatcagccgcaacggcaacgacatgtcc
gccgcgtatccggagctgactgaccgcgcctgctggccggagcaggacttcatcgccgac
ggcgagatcatcgccgtcggaccgtcggggcggcccgacttcgggctgcttcaggggcgg
atgaagctcacgagggccgccgacgtcgcgaaggcgcgggcgtcgacgccggtgcggctg
atgctgttcgacctcctcgccgagcatggcgaggacctccgccgtctgccgctcagcaag
cgccgggtacggctggaagcgtttttcacccccacggactgcccggtggagctctccggg
ctgatcgacggcgatgtccggcacatcctggaaagtgccgaggagctggggcttgagggc
gtgatggccaagcgcacggacggccgctacgtcgggcagcgcagcaggtcctggctcaag
ctcaagttcgaacgcacccaggaggtggtggtcggcggctggcggccgggcaagggcgag
cgcggccagtccgtgggctcgctcctgctggggatcccggacggatccaggctgcgttac
gtggggcgcgtgggcagcggcttcagcgcccgcgagctactggaactgcgccagcagctc
gatgcgctgccgcggaagacctcgccgttcagcgacgtgccggcagccgacgccgcggac
gctcattgggtgagccccaggctggtcggcgaggtcacctacggggaatggaccggcagc
ggcaaactccggcacccggtctggcgcggatggagactggataagaagccggaggacgtg
gtggtggaggacggctga
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