Arthrobacter sp. PAMC25564: E5206_07010
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Entry
E5206_07010 CDS
T06052
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
artp
Arthrobacter sp. PAMC25564
Pathway
artp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
artp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E5206_07010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
artp03021
]
E5206_07010
03400 DNA repair and recombination proteins [BR:
artp03400
]
E5206_07010
Enzymes [BR:
artp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E5206_07010
Transcription machinery [BR:
artp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E5206_07010
DNA repair and recombination proteins [BR:
artp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E5206_07010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
DUF4407
Motif
Other DBs
NCBI-ProteinID:
QCB96708
LinkDB
All DBs
Position
1535957..1539856
Genome browser
AA seq
1299 aa
AA seq
DB search
MSSESSFGLMQIGLATAEDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDADSRHEELPNLQVEHDIEKKQLIDNRDSDIATIARDLENE
IARLEGEGAKAADKKKARDSADRQMANVRKRADAEIERLEQVWDRFKNLKVADLEGDEGL
YRELRDRYGMYFEGSMGAEAIKKRLENFDMQAESDMLRDIIANGKGQRKTRALKRLKVVN
AFLTTNNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKRVGSAGEGR
IFSSVAEAIMAYDLRELHLNSKVKIRLEGFVPYAGWEAPEGWEPGQIALVETSLGQVIFN
QTLPADYPWVENVADKGELSTIVNDLAERYPKVVTAATLDNLKDAGFYWATRSGVTVAIS
DIVVPKDKPRILAGYETMAAKIQGQYDKGLIDDDERRQELIEIWNKATNEIAQAMRDSLS
PMNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREEDCGTERGLITAIAVADANGELVLDE
NVENSAYARTLAVDVVDSKGKVLAAGGTDCGDVVIAELFAAGITEVKVRSVLTCESSVGT
CALCYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSASGGDDITQGLP
RIQELFEARTPKGVAPIAEAAGRITIEESERQMRLVITPDDGSEEIAYPVLRRSRLLIED
GEHVSVGQKLINGPVDPKQVLRIMGPRAAQKFLVDEVQGVYRSQGIGIHDKHVEVIVRQM
LRRVTVIESGESDLLPGELAERSRFEEANRRVVSEGKTPASGRPELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTNVTVEPTEEAKAN
LFTGPSAFSDFSYDSLGGDGAPEFHAIPLDDYDLGNDFR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgaatcctccttcggcctcatgcagatcggcctcgccaccgcggaagacatc
cgtggctggtcttacggcgaggttaagaagccggaaaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccttcccgcgactgggaatgc
tactgcggtaaatacaagcgcgtgcgcttcaagggcatcatctgcgagcggtgtggcgtt
gaggtcacccgtgccaaggtgcgccgtgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgttccgtcccgcctgggctacctccttgacctg
gcaccgaaggacctcgagaaggtcatctacttcgctgcctacatgatcacgagcgtcgac
gccgacagccgccacgaagaactgcccaacctccaggtcgagcacgatatcgagaagaag
cagctgatcgacaaccgcgactcggatatcgccacgatcgcccgcgaccttgagaacgag
atcgcccgtctcgaaggcgaaggcgccaaggctgccgacaagaagaaggcccgcgactcc
gctgaccgccagatggcaaacgtccgcaagcgcgcggacgctgaaatcgagcgcctcgag
caggtctgggaccgcttcaagaacctgaaggtcgccgacctcgaaggcgacgaaggcctg
taccgcgagctccgcgaccgttacggcatgtacttcgaaggctccatgggtgccgaggcg
atcaagaagcgtcttgagaacttcgacatgcaggccgagtcggacatgctgcgcgacatc
atcgccaacggcaagggccagcgcaagacccgagccctgaagcggctcaaggttgtcaac
gccttcctgaccaccaacaacagcccgctcggcatggtgctggacgctgtcccggtgatc
ccgccggaactgcgcccgatggtccagctggacggtggccgcttcgcgacctccgacctc
aacgacctctaccgccgcgtgatcaaccgcaacaaccgcctcaagcgcctgcttgacctc
ggtgccccggagatcatcgtcaacaacgagaagcgcatgcttcaggaagccgttgacagc
ctcttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctgaag
tccctgagcgacatgctcaagggcaagcagggccgtttccgccagaacctcctgggcaag
cgcgttgactactcgggccgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggcctgccgaagcagatggccctggagctcttcaagccgttcgtgatgaagcggctg
gttgacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgttaccgc
ccgcaggtctgggatgtcctcgaagagatcatcaccgagcacccggtgctgctgaaccgt
gcacctaccctgcaccgcctcggcatccaggcgttcgaaccgcagctcgttgaaggcaag
gccatccagctccacccgctggtctgtggcgccttcaacgccgacttcgacggcgaccag
atggcagtgcacctgccgctgagccccgaagcccaggctgaagcccgcatcctgatgctg
tcctcgaacaacatcctgaagccctctgacggccgcccggtgacgctgccttcgcaggat
atgatcatcggtctctaccacctgaccaccaagcgtgtcggttcagctggcgaaggccgg
atcttctcctccgtggcggaagccatcatggcgtacgacctgcgcgaactccacctgaac
tccaaggtcaagatccggcttgagggatttgtcccttacgccggctgggaagctccggaa
ggctgggagcccggccagatcgcactggtcgagacctccctcggacaggtcatcttcaac
cagacactgcctgccgattacccgtgggttgagaacgttgcggacaagggcgaactgtcc
acgatcgtcaacgacctcgccgagcgctacccgaaggttgttacggcggccacgctggac
aacctgaaggacgccggtttctactgggccacccgctcaggcgtcaccgtcgccatctcc
gacatcgtggtgcccaaggacaagccgcggatcctcgccggttacgagaccatggccgcg
aagatccagggccagtacgacaagggcctgatcgacgacgacgagcgccgccaggaactg
atcgagatctggaacaaggcaacgaacgaaatcgcccaggcgatgcgtgacagcctgtcc
ccgatgaacaccatcaaccgcatggtgtcctccggcgcacgtggtaactggatgcaggtc
cgccagatcgcgggtatccgtggcctggtggccaaccctaagggtgagatcatcccgcgt
ccgatcaagtcctcctaccgtgagggcctgtcggtgctggagtacttcatcgccacgcac
ggtgcccgtaagggtctggctgacaccgccctgcgtaccgccaactcgggttacctgacc
cgtcgcctggtggacgtttcgcaggacgtcattgtccgtgaggaggactgcggcaccgag
cgcggcctgatcacggccatcgcggtggctgatgccaacggcgagctggtcctggacgag
aacgtcgagaacagcgcgtacgcccgcaccctggccgtggacgtcgttgactccaagggc
aaggtcctggctgccggcggcaccgactgcggcgacgtcgtcattgccgaactgttcgcg
gcaggcatcaccgaggtcaaggtccgctccgtactcacgtgtgagtccagcgtcggcacc
tgcgccctgtgctacggccgttcgctggccaccggcaagaccgtcgacatcggtgaggca
gtgggcatcatcgccgcgcagtcgatcggtgagcccggtacccagctgaccatgcgtacg
ttccacaccggtggtgctgtttccgccagcggcggcgacgacatcacccagggtctgccc
cgtatccaggagctcttcgaagcccgtactccgaagggtgtcgcaccgattgctgaagca
gccggccgcatcaccatcgaagagtccgagcgccagatgcgcctggtcatcaccccggat
gatggatccgaagagatcgcctacccggtcctgcgccgttcacgtcttctcatcgaagac
ggcgagcacgtcagtgtcgggcagaagctcatcaacggaccggtcgaccccaagcaggtt
ctgcgcatcatgggcccccgcgccgcgcagaagttcctggtggacgaagtacagggcgtc
taccgcagccagggcatcggtatccacgacaagcacgtcgaggttatcgtccgccagatg
ctgcgccgcgtcacggtcatcgagtccggcgaatcggacctgctgcccggcgaactcgcc
gagcgcagccgcttcgaggaagccaaccgccgcgttgtctccgagggcaagacgccggct
tccggccgtcctgagctcatgggcatcaccaaggcgtccctggcgaccgagtcctggctg
tccgcagcttccttccaggaaaccacccgcgtcctgacgcaggcggccatggaaggcaag
agcgatccgctgctcggcctcaaggaaaacgtcatcatcggtaagctcatcccggcaggc
acgggtctcccgcgctacaccaatgtcacggtggagcccactgaagaagcaaaggccaac
ctgttcaccggcccgagcgcattcagtgacttctcctacgattcgctgggcggcgacggg
gctcccgagttccacgccatcccgctggatgactacgacctgggcaacgacttccgctga
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