Arthrobacter sp. PAMC25564: E5206_10590
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Entry
E5206_10590 CDS
T06052
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
artp
Arthrobacter sp. PAMC25564
Pathway
artp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
artp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5206_10590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
artp03019
]
E5206_10590
03009 Ribosome biogenesis [BR:
artp03009
]
E5206_10590
Enzymes [BR:
artp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E5206_10590
Messenger RNA biogenesis [BR:
artp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E5206_10590
Ribosome biogenesis [BR:
artp03009
]
Prokaryotic type
rRNA processing factors
E5206_10590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
QCB97319
UniProt:
A0A4P7SS44
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All DBs
Position
2276442..2279657
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AA seq
1071 aa
AA seq
DB search
MDNDQIVAVNEAAVVNEGTAETAGTEENAETAAPAAPKRAVRTRRKATPKAEPTEPAAEA
AATGEAPAAVPAAEPAEAAASEVKAKAPARRTRARKPAAEPLPPAEETAGEETAGEAAVQ
ASAQPGAEAQTAEAPAEAPAAEKPARRRASRAKTAAPAVEAVPEPAPAAEEVAAQEFAAE
AAGTAVAATTATEASAAGAPAAEAPAAAAAPAPASSLFLEPGAVTSMIFQAPDLSTVVRP
VTVEAAEEDEEEGGEEGEDASRRRRRSRGRRGRTTRTAGESETEAEGSAEEAEEGSEGTL
EEGVTSRRRRRRRRGDQDLELTGGGDNDPPNTVTRVRAPRAATEAPVNNRVTSLKGSTRL
EAKKQRRRESRDTGRRRTVITEAEFLARRESVDRQMIVRQRDDRIQIGVLEDGVLAEHFV
SKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVNWDAVNLEGKQRRIEN
ALKSGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDVERNRLKR
ILKDRLPEDAGVIVRTAAEGASEEELTHDINRLRAQWEGIESQSTSTKILAPELLYGEPD
LTIKVVRDVFNEDFSKLIVSGEEAWDTIEAYVTYVAPDLVGRLEKWTKDTDIFAAWRIDE
QIHKALDRKVFLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVR
QLRLRDIGGIIVIDFIDMVLESNRDLVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRM
GTGLLEVFGEQCEACAGRGIVTHDEPVEHRRANTVAAEHYVPRTESQPAAVRTERKGRRR
GKGGQALEGAPTAAPAHAEPTEAERHAKAEATRAALANIAAAAHAAHLHDGETAAEAGTR
RADAAARQAAVQAALELAEKEDAASGRPAAVLTFGGEQVALPFVEHTEEAPAPALTLDLL
NEAFAQLGEEAQVEEDQAPAAVSRPAVSRPAPAAEGTTPRARRGRRNRSASRAQGAANAT
SVEHHEALEHREATRPAAAVHEAKAPATPAAKPAAANEPIILGVGVPASEL
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggataatgaccagattgtagccgttaacgaagcagcagttgttaacgagggaacagca
gagacagcgggaacagaagaaaacgcggaaacagcagctccggcagcccccaagcgggct
gtcaggacacggcgcaaagccaccccgaaagcagagccgacggagcctgccgctgaagcg
gcagccacgggcgaagcacccgccgcagtcccggctgcagagccggccgaggcagcagcc
tccgaagtaaaagccaaggcaccggcccggcgcacccgcgcccggaagccggcggccgag
ccgctgccccctgccgaggaaactgccggggaggaaaccgcgggtgaggccgctgtccag
gcaagcgcgcagcccggggctgaagcccagaccgctgaagctcccgccgaggctcccgca
gcagaaaagcctgcccggcgtcgtgccagccgggccaagactgccgccccggccgttgaa
gctgtaccggaaccggcccccgcagcggaggaagtcgcagcgcaggaattcgcagcggag
gctgccgggacggctgtcgccgccacaacggcgactgaagcttctgcagcaggtgccccc
gccgcagaggccccggctgctgccgcagcccctgctccggcctcctcgctcttcctcgag
cccggagcagtcacgtccatgatcttccaggcccccgacctgagcaccgtggtccgcccg
gtcacggttgaggccgccgaggaggacgaagaagaaggtggcgaagaaggcgaagacgcc
agccgccgccgccgtcgcagccgcggacgccgcggacgcacgacccgcacggccggcgaa
tccgagaccgaggcagaaggttccgcagaggaagccgaagaaggctccgagggaaccctg
gaggagggcgtgacctcgcgccgccgccggcgccgccgccgtggtgaccaggacctcgaa
ctcacgggcgggggagacaacgatccgcccaacacggtgacccgggtccgcgcaccccgt
gcggccaccgaggcgccggtcaacaaccgcgtcacgtcccttaagggctctacccgcctt
gaggccaagaagcagcgccgccgggaatcccgcgacaccggacgccgccgcaccgtcatc
accgaggccgagttcctggcccgccgcgaatccgtggaccggcagatgatcgtccgccag
cgcgacgacagaatccagatcggcgtcctcgaggacggcgtcctggccgagcactttgtc
tccaagacccagcaggattccctgatcggcaacgtctacctgggcaaggtccagaatgtg
ttgccctccatggaagccgccttcgtcgacatcggacgcggccgcaatgccgtcctctac
gccggtgaagtcaactgggatgcggtcaatctcgagggaaagcagcgccggatcgagaac
gcgctgaagtccggggactccgtgctcgtccaggtcaccaaggaccctgtcggccataag
ggcgcccgcctcacgagccagatttcgctgcccggccgttacctcgtgtacgtgcccggc
ggctccatgaccggcatctcccgcaagctgcccgacgtcgaacgcaaccggctcaagcgg
atcctcaaggaccgcctgccggaagatgccggcgtgatcgtccgtaccgcggccgagggt
gcatccgaggaagagctcacacacgatatcaaccggctgcgggcccagtgggaaggcatc
gaaagccagtccacgtccaccaagatcctcgcccccgagctgctctacggcgaacccgac
ctgaccatcaaggtggtccgcgacgtcttcaatgaggacttctccaagttgatcgtctcc
ggcgaggaagcctgggacaccatcgaggcctatgtcacctacgtggcgccggatctggtg
ggccggctcgagaagtggaccaaggacacggacatcttcgctgcgtggcggatcgacgag
cagatccacaaggccctggaccgcaaggtcttcctgccctccggcggttccctcgtgatc
gaccgcaccgaagccatgaccgtggtggacgtcaacaccggcaagttcaccggctccggc
ggcaaccttgaggaaaccgtcaccaagaacaacctggaggcggccgaggaagtcgtccgg
cagctccggctccgggacatcggcggcatcatcgtgatcgacttcatcgacatggtgctc
gaatccaaccgcgacctggtcctgcgccgcatggtggagtgcctgggccgggaccggacc
aagcaccaggtggccgaggtgacctcgctggggctcgtgcagatgacccgtaagcggatg
ggcaccgggctgctcgaggtcttcggcgaacagtgcgaggcctgcgccggccgcggcatc
gtcacgcacgacgagccggtcgagcaccgccgggccaacaccgtcgccgccgaacactac
gtgccgcggaccgaatcccagcccgcggccgtccggaccgagcgcaagggccgccgccgc
ggaaagggcggacaggccctggagggcgccccgacggctgcgccagcgcacgccgagccc
accgaggcagagcgccacgccaaggcggaggcaacgcgtgccgccctggccaacatcgcc
gccgctgcgcacgccgcccacctgcacgatggggagacggccgccgaggccggaacccgc
cgggccgacgccgcggcccgccaggccgcggtccaggcggccctcgagctggccgagaag
gaagatgctgcgtcgggacgtcccgccgccgtgctgactttcggcggcgagcaggttgcc
ctgccgttcgtggagcacaccgaggaggcgccggctccggcactcacgctggatctgctg
aatgaggccttcgcccagctgggcgaagaagcccaggttgaggaagaccaggctccggca
gccgtgtcccggcctgcggtctccaggcccgcgccggcagcggaaggcaccacgccccgc
gcccgccgcggacgccggaaccggagcgccagccgcgcccagggggcagccaacgcgacg
tccgttgaacaccacgaggcacttgaacaccgcgaggcaacccggccggccgcagccgtc
catgaggccaaggctccggccacgccggcggccaagcccgccgcagcgaacgagccgatc
atcctcggcgtcggtgtgccggcgtcggagctgtag
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