Arthrobacter sp. 7749: CGQ24_13635
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Entry
CGQ24_13635 CDS
T10551
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
artq Arthrobacter sp. 7749
Pathway
artq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
artq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGQ24_13635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
artq03019
]
CGQ24_13635
Messenger RNA biogenesis [BR:
artq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CGQ24_13635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
YicC-like_C
BORCS8
Motif
Other DBs
NCBI-ProteinID:
ASN39951
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Position
complement(2990581..2992284)
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AA seq
567 aa
AA seq
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MTDSSSVGTDVLHNLPPKLKPGTLRIVPLGGLGEVGRNMAVFEIDGKLLIVDCGVLFPEE
HQPGVDLILPDFSYIKDRLDDVVGLVLTHGHEDHIGAVPYLLRLRGDIPLIGSRLTLALI
SAKLEEHRIRPVLKQVVEGDVETFGPFETEFVAVNHSIPDALAVFIRTDAGNVLHTGDFK
MDQLPLDGRITDLRHFARLADEGVDLFMPDSTNAEVPGFTTAERDIGPVLESLFGRARKR
IIVASFSSHMHRVQQVIDAAQVHGRKVAFIGRSMVRNMTIAEKLGYLHVPAGILVDMKNV
DKLPDNKVVLMSTGSQGEPMAALSRMATGDHRIQVGPGDTVILASSLIPGNENSVFRVIN
GLMRLGADVIHKGMAKIHVSGHASAGELLYCYNILQPLNVMPVHGETRHLIANGRLAAQS
GVPAENVLLTEDGSVVDLRDGVAKLVGQVDCGYVYVDGSKVGTITDEDLKDRVTLAEEGF
ISVISVINRQSGKLISGPDIHARGVAEDDKVFDEIKPKIAEAIEEAVRNNPTHTTYQLQQ
VVRRIMGSWVSRKLRRKPMIVPVVLEA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattcctcttctgtgggcaccgatgtgctccacaaccttccgcccaagctgaag
cctggcaccctgcgcatcgtgccgctcggtggcctcggtgaggttggacggaacatggcc
gtcttcgaaattgacggcaaactgctgatcgtcgactgtggtgtgctcttccccgaggag
caccagccgggcgtggacttgatcctgcccgatttcagctacatcaaggaccgtctggac
gatgtggtgggcctggtgctcacccacggccacgaggaccacattggtgccgtaccgtac
ctgttgcgcctgcgtggagacatcccgctgatcggctcacgcctgacgctcgcgctgatc
tccgccaagctggaagagcaccgcattcgtccggtactcaagcaggttgtcgagggtgac
gtggagaccttcggtccgtttgagaccgaatttgtggcagtaaaccactcgatccccgac
gccctggccgtcttcatccgcaccgatgccggcaacgtcctgcacaccggtgacttcaag
atggaccagcttccccttgatggtcgcatcaccgacctgcgccacttcgcccgcctcgcg
gacgagggcgtggatctgtttatgcccgactccaccaacgccgaggttcccggtttcacc
accgcggaacgcgacattggaccggtcctcgaatcgctcttcggtcgtgcacgcaagcgc
atcatcgtcgcttcgttctcctcgcacatgcaccgcgtgcagcaggttatcgacgccgca
caggttcacggtcgtaaggtggccttcattggccgctcgatggtccgcaacatgaccatc
gccgaaaagcttggttacctgcacgtgcccgccggcattctggtggacatgaaaaacgtt
gacaagctgccggataacaaggttgtgctgatgtccaccggttcgcagggcgagccgatg
gcagcactgtcccgcatggccaccggagatcaccgcattcaggtgggcccgggcgacacc
gtcatcctggcttcctcgctgattccgggcaacgagaactcggtcttccgcgtgatcaat
ggtctgatgcgcctgggtgcagatgtcatccacaagggcatggccaagattcacgtctcg
ggccacgcctcggccggcgagctgttgtactgctacaacatcctgcagccgctgaacgtc
atgccggttcacggcgagacccgccacctgattgccaatggccgcctggccgcgcagtcc
ggtgtcccggccgaaaacgttctcctcaccgaggacggctcggttgttgacctgcgcgac
ggtgtggccaagctggttggccaggttgactgcggttacgtttacgttgatggctccaag
gttggcaccatcaccgacgaagacctcaaggaccgcgtcacgctggccgaagagggcttc
atctcggtgatctccgtgatcaaccgccagagcggcaagctgatctccggaccggacatc
cacgcacgtggtgtggccgaggatgacaaggtctttgacgagatcaagccgaagatcgcc
gaagccatcgaggaagctgtgcgcaacaacccgacgcacaccacctaccagctgcagcag
gtagttcgccgcatcatgggctcgtgggtgtcgcgcaagctgcgccgcaagccgatgatc
gttccggtcgtgctcgaagcctaa
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