Arthrobacter sp. UKPF54-2: E7Y32_12310
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Entry
E7Y32_12310 CDS
T10403
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
artu Arthrobacter sp. UKPF54-2
Pathway
artu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
artu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E7Y32_12310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
artu03019
]
E7Y32_12310
03009 Ribosome biogenesis [BR:
artu03009
]
E7Y32_12310
Enzymes [BR:
artu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E7Y32_12310
Messenger RNA biogenesis [BR:
artu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E7Y32_12310
Ribosome biogenesis [BR:
artu03009
]
Prokaryotic type
rRNA processing factors
E7Y32_12310
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
QDY90904
LinkDB
All DBs
Position
2664258..2667605
Genome browser
AA seq
1115 aa
AA seq
DB search
MDNDQLVAGNDEATVTEEATETAAAIEAPKKATRTRRKAAPKADALPAHAPAADAEAAAG
TEAAAGTSDAVAEAAADNPAAAEPAKAPARRSRSRKKIEAEAEPAEPVAAAEEAPADAPA
AEQPAAEEAPEKPVRRRASRAKKAAPVAEETEDAAPADAEPAPETADVATDATPAADTPD
TSEAPSLFLAPGAVTSMIFQAPDLTAVVRPAPAAAEETEDEDEEAEGDDAGSRRRRRSRG
RRGRSRTGEADTDADGGTDGAAESGEDTEGTLEDGVTSRRRRRRRRGDQDLELTGGGDDD
PPNTVTRVRAPRAISEAPPSNRVTSVKGSTRLEAKKQRRRESRDTGRRRTVITEAEFLAR
RESVDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAF
VDIGRGRNAVLYAGEVNWDAVNLEGKQRRIENALKSGDSVLVQVTKDPVGHKGARLTSQI
SLPGRYLVYVPGGSMTGISRKLPDVERNRLKRILKDRLPESAGVIVRTAAEGASEEELTH
DINRLRAQWEGIESQSTSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTI
EAYVTYVAPDLVGRLEKWTKDTDIFAAWRIDEQIHKALDRKVFLPSGGSLVIDRTEAMTV
VDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVL
RRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVVTHDEPVE
HRRANTVAAEHHIPRADHQPAARTERKRRRGRGGQGSDEQSAPVAAHPEPTEAERHAKAE
ATRAALANIAAAAHAAHLHDGEATAAPDAETRQAALDAAVEVASTEEAAGRPAAVLTFGG
EQVALPFVEHAEEAQQPALTLDLLTEAFANLGDAEANKPAAAEQGAEAPEAEAEPAPQAP
AAEAAETAAPVPSRATRGRGRARTARIQPPSARTREPQAPARQEAAKVPAAQAPVRQEAA
KAPAAQTPVRQEAAKAPVAQAAATDTTAPRRVRRNRSASRAQGAANETSVQQRAAAPSAA
GSVHEAKAPEPAKVAAKPAASEPIILGVGVPASEL
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggataatgaccagcttgtagccggtaacgacgaagcaactgttaccgaggaagcaacg
gaaaccgccgcagcaatcgaggcgccgaagaaggccacccggacccggcgcaaggccgcg
cccaaggcggacgcccttcctgcgcacgcccccgctgcggacgcggaagccgcggccggc
accgaagcagcggccggcacgtccgacgccgtcgctgaagccgccgctgacaaccccgcc
gccgcggagccggccaaggccccggcccgccggagccggtcgcggaaaaagatcgaagcc
gaagccgaacccgccgagccggttgcagcagctgaagaggcaccggctgacgccccggcc
gctgagcagcccgcagcggaggaagccccggagaagcccgtccgccgccgcgcctcccgc
gccaagaaggcggcccccgtggccgaggagaccgaggacgccgccccggccgacgccgag
ccggctcccgaaaccgccgacgttgcaaccgacgccaccccggctgcggatacccccgac
acctccgaggccccgtcactgttcctcgcgcccggcgccgtcacctcgatgatcttccag
gccccggacctgaccgccgtcgtccgccccgccccggccgcagccgaggaaacggaagac
gaggacgaagaagccgaaggtgacgacgccggcagccgccgccgccgtcgcagccgtgga
cgccgcggccgcagccgcaccggcgaagctgacaccgacgccgatggcggaaccgacggc
gccgccgagtccggcgaggacaccgagggcaccctcgaggacggcgtgacctcgcgccgc
cgccgccgtcgccgccgcggtgaccaggacctcgagctgaccggcggcggggacgacgat
ccgcccaacacggtcacccgcgtccgtgccccgcgcgcaatcagcgaggccccgcccagc
aaccgcgtgacctccgtcaagggttccacccgcctggaggccaagaagcagcgccgccgc
gaatcccgcgacaccggccgccgccgtaccgtcatcaccgaggccgagttcctggcccgc
cgcgaatccgtggaccgccagatgatcgtccgccagcgcgacgacagaatccagatcggc
gtcctcgaagacggcgtactggccgagcattttgtctccaagacccagcaggactccctg
atcgggaacgtctacctgggcaaggtccagaacgtgctgccgtccatggaagcggcgttc
gtcgacatcggacgcggccgcaacgccgtgctctacgccggcgaggtcaactgggacgcc
gtcaacctcgagggcaagcagcgccggatcgaaaacgcgctcaagtccggcgactccgtg
ctggtccaggtcaccaaggaccccgtcggccacaagggcgcccgtctgaccagccagatc
tccctgcccggccggtacctcgtgtacgtgcccggcggctccatgaccggcatctcccgc
aagctgcccgacgtcgaacgcaaccgcctcaagcggatcctcaaggaccgcctgccggag
agcgccggcgtgatcgtccgcaccgccgccgagggcgcgtccgaggaagagctgacgcat
gacatcaaccgtctgcgcgcccagtgggaaggcatcgagagccagtccacgtccaccaag
attctggccccggagttgctctacggcgaaccggacctgaccatcaaggtggtccgcgac
gtcttcaacgaggacttctccaagctgatcgtctcgggcgaggaagcctgggacaccatc
gaggcctacgtcacctacgtggctccggacctggtgggccggctcgagaagtggaccaag
gacacggacatcttcgcggcctggcgcatcgacgagcagatccacaaggcgctggaccgc
aaggtcttcctgccctccggcggctcgctcgtgatcgaccgcaccgaagccatgaccgtg
gtggacgtcaacaccggtaaattcaccggcagcggcggcaacctcgaggaaaccgtcacc
aagaacaacctggaagcggccgaggaagtcgtccggcagctccggctccgggacatcggc
ggcatcatcgtgatcgacttcatcgacatggtgctcgaatccaaccgcgacctcgtgctg
cgccgcatggtggagtgcctgggccgcgaccggaccaagcaccaggtggccgaggtgacc
tcgctggggctcgtgcagatgacccgcaagcggatgggcaccgggctgctggaagtcttc
ggcgaacagtgtgaagcctgcgccggccgcggcgtcgtcacccatgacgagcccgtcgag
caccgccgcgccaacaccgtcgccgcggaacaccacatcccgcgcgccgatcaccagccc
gccgcgcgtaccgaacggaagcgccgccgcggccggggtggccagggctcggacgagcag
tccgcgcccgttgcagcgcacccggagcccaccgaggccgagcgccacgccaaggcagag
gctacccgcgcagcgctggcgaacatcgccgccgcggcgcacgccgcccacctccacgac
ggcgaagcaaccgcagcgcccgacgccgaaacccgccaggcggcgctggacgcggccgtg
gaagttgcctcgaccgaggaagctgccgggcgtccggccgccgtgctgacgttcggcggc
gagcaagttgcgctgcccttcgtcgagcacgccgaggaagcgcagcagccggcgctgacc
ctggatctgctcaccgaggcctttgccaacctgggcgacgccgaggccaacaagccggcg
gcagcggaacagggtgcggaagcacccgaagctgaagctgagcccgcaccgcaggcccct
gcagcggaagcagccgaaacggccgccccggtgccgtcccgtgccacccgtggccgggga
cgtgcccggaccgcacggatccagcccccgagtgcccgcacccgcgaaccgcaggcacct
gcccgccaggaagcggccaaggtaccggctgcgcaggcacccgtccggcaggaagccgcc
aaggctcccgctgcgcagacacccgtccgccaggaagccgccaaggcaccggtagcgcag
gccgccgccacggacaccacggcgccgcgcagagtacgccggaaccggagcgccagccgc
gcccagggcgccgccaacgagacgtccgtgcagcagcgcgcggccgctccgtcggccgcc
ggatcggtccacgaagccaaggccccggagccggcgaaggtggccgccaagccggcagcc
agcgagccaatcatcctaggcgtcggcgtgcccgcctcggagctatag
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