Arthrobacter sp. Hiyo4: AHiyo4_17280
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Entry
AHiyo4_17280 CDS
T08405
Name
(GenBank) putative ribonuclease J Rv2752c
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
arty
Arthrobacter sp. Hiyo4
Pathway
arty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AHiyo4_17280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arty03019
]
AHiyo4_17280
Messenger RNA biogenesis [BR:
arty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AHiyo4_17280
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
BRK
DUF459
Motif
Other DBs
NCBI-ProteinID:
BAS08306
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Position
1298154..1299368
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AA seq
404 aa
AA seq
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MFIRTAGGTVLHTGDFKMDQLPLDGRITDLRHFAKLGEEGVDLFMSDSTNADVPGFTTAE
KEIGPTLERLFGQATKRIIVASFSSHVHRVQQVLDAAAKHNRKVAFVGRSMVRNMAIAAK
LGYLDVPDGLLVDIKNIDNMPDNRVVLMSTGSQGEPMAALSRMANGDHRVVVGDGDTVIL
ASSLIPGNENAVFRIINGLLKLGADVIHKGNAKVHVSGHAAAGELLYCYNILEPLNAMPV
HGETRHLIANGKIAIESGVPTASVILADNGTVIDLKDHRADVVGQVEVGFVYVDGSSVGE
VTEADLKDRQTLGDEGFISIITVINRTTGKVVSGPEIHARGVAEDDSVFDEIIPKINAAL
EEAVLNRTDHTTHQLQQVVRRVVGTWVNRKLRRKPMIIPVVLEA
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
gtgttcatccgcacggccggcggcactgtcctgcacacgggcgacttcaagatggaccag
ctgcccctggacggccggatcaccgacctcaggcacttcgccaagctgggtgaagagggc
gttgacctctttatgtccgactccaccaacgctgacgtgccgggcttcaccaccgcagaa
aaggaaatcggacccacgctggaacggcttttcggccaggccactaagcgcatcatcgtg
gcgtccttctcctcgcatgtccaccgcgtccagcaggtccttgacgccgccgccaagcac
aaccgcaaggtggccttcgtgggccgctccatggtccgcaacatggccatcgccgccaag
ctcggctacctcgacgttcccgacggcctcctcgtggacatcaagaacatcgacaacatg
ccggacaaccgcgtggtcctgatgtccacgggttcccagggcgaaccgatggccgccctg
tcccgcatggctaacggcgaccaccgcgtcgtggtgggcgacggcgacaccgtgatcctg
gcctccagccttatcccgggcaacgaaaacgccgtcttccgcatcatcaacggcctgctc
aagctcggcgcggacgtgatccacaagggcaacgccaaggtgcacgtctccggacacgca
gccgccggcgagctgctctactgctacaacatccttgagccgctcaacgccatgcccgtg
cacggcgagacccgccacctgatcgccaacggcaagatcgccatcgagtccggcgtcccc
accgccagcgtcatccttgccgacaacggcaccgtgatcgacctcaaggaccaccgcgca
gacgtcgtgggccaggttgaagtgggctttgtttacgtggacggctccagcgtcggcgaa
gtcacggaagcggacctcaaagaccgccagacgctcggcgatgaaggcttcatctccatc
atcaccgtcatcaaccgcaccaccggcaaggtggtctccggacccgagatccacgcccgc
ggcgtggccgaggacgattcggtcttcgacgagatcatccccaagatcaacgccgccctg
gaagaagctgtgctcaaccgcacggaccacaccacgcaccagctccagcaggttgtccgc
cgagttgtcggcacctgggtcaaccgcaagctgcgccgcaagcccatgatcatcccggtg
gtcctcgaggcgtaa
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