KEGG   Arthrobacter sp. Hiyo4: AHiyo4_17280
Entry
AHiyo4_17280      CDS       T08405                                 
Name
(GenBank) putative ribonuclease J Rv2752c
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
arty  Arthrobacter sp. Hiyo4
Pathway
arty03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:arty00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AHiyo4_17280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:arty03019]
    AHiyo4_17280
Messenger RNA biogenesis [BR:arty03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AHiyo4_17280
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL BRK DUF459
Other DBs
NCBI-ProteinID: BAS08306
LinkDB
Position
1298154..1299368
AA seq 404 aa
MFIRTAGGTVLHTGDFKMDQLPLDGRITDLRHFAKLGEEGVDLFMSDSTNADVPGFTTAE
KEIGPTLERLFGQATKRIIVASFSSHVHRVQQVLDAAAKHNRKVAFVGRSMVRNMAIAAK
LGYLDVPDGLLVDIKNIDNMPDNRVVLMSTGSQGEPMAALSRMANGDHRVVVGDGDTVIL
ASSLIPGNENAVFRIINGLLKLGADVIHKGNAKVHVSGHAAAGELLYCYNILEPLNAMPV
HGETRHLIANGKIAIESGVPTASVILADNGTVIDLKDHRADVVGQVEVGFVYVDGSSVGE
VTEADLKDRQTLGDEGFISIITVINRTTGKVVSGPEIHARGVAEDDSVFDEIIPKINAAL
EEAVLNRTDHTTHQLQQVVRRVVGTWVNRKLRRKPMIIPVVLEA
NT seq 1215 nt   +upstreamnt  +downstreamnt
gtgttcatccgcacggccggcggcactgtcctgcacacgggcgacttcaagatggaccag
ctgcccctggacggccggatcaccgacctcaggcacttcgccaagctgggtgaagagggc
gttgacctctttatgtccgactccaccaacgctgacgtgccgggcttcaccaccgcagaa
aaggaaatcggacccacgctggaacggcttttcggccaggccactaagcgcatcatcgtg
gcgtccttctcctcgcatgtccaccgcgtccagcaggtccttgacgccgccgccaagcac
aaccgcaaggtggccttcgtgggccgctccatggtccgcaacatggccatcgccgccaag
ctcggctacctcgacgttcccgacggcctcctcgtggacatcaagaacatcgacaacatg
ccggacaaccgcgtggtcctgatgtccacgggttcccagggcgaaccgatggccgccctg
tcccgcatggctaacggcgaccaccgcgtcgtggtgggcgacggcgacaccgtgatcctg
gcctccagccttatcccgggcaacgaaaacgccgtcttccgcatcatcaacggcctgctc
aagctcggcgcggacgtgatccacaagggcaacgccaaggtgcacgtctccggacacgca
gccgccggcgagctgctctactgctacaacatccttgagccgctcaacgccatgcccgtg
cacggcgagacccgccacctgatcgccaacggcaagatcgccatcgagtccggcgtcccc
accgccagcgtcatccttgccgacaacggcaccgtgatcgacctcaaggaccaccgcgca
gacgtcgtgggccaggttgaagtgggctttgtttacgtggacggctccagcgtcggcgaa
gtcacggaagcggacctcaaagaccgccagacgctcggcgatgaaggcttcatctccatc
atcaccgtcatcaaccgcaccaccggcaaggtggtctccggacccgagatccacgcccgc
ggcgtggccgaggacgattcggtcttcgacgagatcatccccaagatcaacgccgccctg
gaagaagctgtgctcaaccgcacggaccacaccacgcaccagctccagcaggttgtccgc
cgagttgtcggcacctgggtcaaccgcaagctgcgccgcaagcccatgatcatcccggtg
gtcctcgaggcgtaa

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