Arthrobacter sp. U41: ASPU41_00900
Help
Entry
ASPU41_00900 CDS
T05053
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aru
Arthrobacter sp. U41
Pathway
aru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ASPU41_00900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aru03021
]
ASPU41_00900
03400 DNA repair and recombination proteins [BR:
aru03400
]
ASPU41_00900
Enzymes [BR:
aru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ASPU41_00900
Transcription machinery [BR:
aru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ASPU41_00900
DNA repair and recombination proteins [BR:
aru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ASPU41_00900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
DUF4407
Motif
Other DBs
NCBI-ProteinID:
AOT02109
LinkDB
All DBs
Position
complement(185769..189668)
Genome browser
AA seq
1299 aa
AA seq
DB search
MSSESSFGLMQIGLATAEDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDADSRHEELPNLQVEHDIEKKQLIDNRDSDIATIARDLENE
LARLEGEGAKAADKKKARDSADRQMANVRKRADAEIERLEQVWDRFKNLKVADLEGDEGL
YRELRDRYGMYFEGSMGAEAIKKRLENFDMQAESDMLRDIIANGKGQRKTRALKRLKVVN
AFLTTNNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKRVGSAGEGR
IFSSVAEAIMAFDLHELHLNSQVKIRLEGFVPYAGWEAPEGYEPGQTVLVQTSLGQVLFN
ETLPADYPWVENVADKGELSTIVNDLAERYPKVVTAATLDNLKDAGFYWATRSGVTVAIS
DIEVPKDKPRILAGYETMAAKIQGQYDKGLIDDDERRQELIEIWNKATNEIAQAMRDNLS
PMNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREEDCGTERGLMTAIAVADANGELVLDE
NVENSAYARTLAVDVVDSKGKVLAAGGTDCGDVVIAELFAAGITEVKVRSVLTCESSVGT
CALCYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSSSGGDDITQGLP
RIQELFEARTPKGVAPIAEAAGRITIEESERQMRLVITPDDGSEEIAYPVLRRSRLLIED
GEHVSVGQKLINGPVDPKQVLRIMGPRAAQKFLVDEVQGVYRSQGIGIHDKHVEVIVRQM
LRRVTVIESGESDLLPGELAERSRFEDANRRVVSEGKTPASGRPELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTEVTVEPTEEAKAN
LFTGPSAFSDFSYDSLGGDGAPEFHAIPLDDYDLGSDFR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgaatcctccttcggcctcatgcagatcggcctcgccaccgcggaagacatc
cgtggctggtcttacggcgaggttaagaagccggaaaccatcaactaccgcacgctcaag
cctgagaaggacggcctcttctgcgagaagatcttcggcccgtcccgcgactgggagtgc
tactgcggtaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcggtgtggcgtt
gaagtcacccgcgccaaggtccgccgtgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgttccgtcccgtctgggctacctcctggacctg
gcaccgaaggacctcgaaaaggtcatctacttcgctgcctacatgatcacgagcgtcgac
gccgacagccgccacgaagaactgcccaacctccaggttgagcacgacatcgagaagaag
cagctgatcgacaaccgcgactcggacatcgccacgatcgcgcgcgacctcgagaacgag
cttgcccgtctcgaaggcgaaggcgccaaggctgccgacaagaagaaggcccgcgactcc
gctgaccgccagatggctaacgtccgcaagcgcgcggatgctgaaatcgagcgcctcgag
caggtctgggaccggttcaagaacctcaaggtcgctgaccttgaaggcgacgaaggcctg
taccgcgaactgcgcgaccgctacggcatgtacttcgaaggctccatgggtgccgaagcg
atcaagaagcgtcttgagaacttcgacatgcaggccgagtcggacatgctccgcgacatc
attgccaacggcaagggccagcgcaagacccgcgccctgaagcggctcaaggtggtcaac
gcgttcctgacgaccaacaacagcccgctcggcatggtgctggacgctgtcccggtgatt
ccgccggaactgcgcccgatggtccagctggacggtggccgctttgcgacctccgacctc
aacgacctctaccgccgcgtgatcaaccgcaacaaccgcctcaagcgcctgcttgatctc
ggtgctccggagatcatcgtcaacaacgagaagcgcatgcttcaggaagctgttgacagc
ctcttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctgaag
tccctgagcgatatgctcaagggcaagcagggtcgtttccgccagaacctcctgggtaag
cgcgttgactactccggccgttccgtgatcgtcgtcggcccgcagctgaagctgcaccag
tgtggcctgccgaagcagatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gttgacctcaaccacgcgcagaacatcaagtcggccaagcggatggtcgagcgttaccgc
ccgcaggtctgggatgtcctcgaagagatcatcaccgagcacccggtgctgctgaaccgt
gcacccaccctgcaccgtctcggcatccaggcgttcgagccgcagcttgttgagggcaag
gcaatccagcttcacccgctggtttgtggcgccttcaacgctgacttcgacggtgaccag
atggcagtgcacctgccgctgagccccgaagcccaggccgaagcccgcatcctgatgctg
tcctcgaacaacatcctgaagccgtctgacggccgcccggtgacgctgccttcgcaggat
atgatcatcggcctctaccacctgaccaccaagcgtgtcggttcagctggcgagggccgg
atcttctcctccgtcgcggaagccatcatggcgttcgacctgcacgagctgcacctgaac
tcccaggtcaagatccggctggagggctttgtcccttacgccggctgggaagctccggaa
ggttacgagccgggtcagaccgtgctcgtccagacctccctgggccaggtcctcttcaac
gagacgcttcccgccgactacccgtgggttgagaacgttgctgacaagggcgaactgtcc
accatcgtcaacgatctcgccgagcgctacccgaaggtggtcacggcggcaacgctggac
aacctgaaggatgccggtttctactgggccacccggtccggtgtcaccgtcgccatctcc
gacatcgaggtgcccaaggacaagccgcggatcctcgccggttacgagaccatggctgcc
aagatccagggccagtacgacaagggcctgatcgacgacgacgagcgtcgccaggaactg
atcgagatctggaacaaggcaacgaacgagatcgcccaggcgatgcgtgacaacctgtcc
ccgatgaacaccatcaaccgcatggtgtcctccggtgcacgtggtaactggatgcaggtc
cgtcagatcgcgggtatccgtggcctggtggccaaccctaagggtgagatcatcccgcgt
ccgatcaagtcctcgtaccgcgagggcctgtcggtgctggaatacttcatcgccacgcac
ggtgcccgtaagggtctggctgacaccgcgctgcgtaccgccaactcgggttacctgacc
cgtcgtctggtggacgtgtcgcaggatgtcatcgtccgcgaagaggactgcggcaccgag
cgcggcctcatgaccgccatcgcggtggctgacgccaacggcgagctggtcctggacgag
aacgtcgagaacagcgcgtacgcccgtaccctggccgtggatgtcgttgactccaagggc
aaggtcctggcagcaggcggcaccgactgcggcgacgtcgtcattgccgaactgttcgca
gccggcatcaccgaggtcaaggtccgctccgtactcacctgtgagtccagcgtcggcacc
tgcgccctgtgctacggccgttcgctggccacgggcaagaccgtcgacatcggtgaggca
gtcggcatcatcgccgcgcagtccatcggtgagccgggtacccagctgaccatgcgtacg
ttccacaccggtggtgctgtttcctccagcggtggcgacgacatcacccagggtctgccc
cgtatccaggagctcttcgaagcccgtactccgaagggtgtcgcaccgattgctgaagca
gccggccgcatcaccatcgaagagtccgagcgccagatgcgcctggtcatcaccccggat
gacggatccgaagagatcgcttacccggtcctgcgccgttcacgtcttctcatcgaagac
ggcgagcacgtcagcgtcggccagaagctcatcaacggtccggtcgaccccaagcaggtt
ctgcgcatcatgggcccccgtgccgcgcagaagttcctggtcgacgaggtccagggcgtg
taccgcagccagggcatcggtatccacgacaagcacgtcgaggttatcgtccgccagatg
ctgcgccgcgtcacggtcatcgagtccggcgaatcggacctgctgcccggcgagctcgcc
gagcgcagccgtttcgaggatgccaaccgccgcgttgtgtccgagggcaagacgccggct
tccggccgtcccgagctcatgggcatcaccaaggcgtccctggcgaccgagtcctggctg
tccgcagcttccttccaggagaccacccgcgtcctgacgcaggcggccatggaaggcaag
agcgatccgctgctcggcctcaaggaaaacgtcatcatcggtaagctcatcccggccggc
acgggtctcccgcgctacaccgaggtcaccgtggagcccactgaggaagcaaaggccaac
ctgttcaccggccccagcgcgttcagtgatttctcctacgattccctgggcggcgacgga
gctcctgagttccatgccatcccgctggatgactacgatctgggcagcgacttccgctaa
DBGET
integrated database retrieval system
