Arthrobacter sp. U41: ASPU41_07235
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Entry
ASPU41_07235 CDS
T05053
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aru
Arthrobacter sp. U41
Pathway
aru03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ASPU41_07235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aru03400
]
ASPU41_07235
Enzymes [BR:
aru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ASPU41_07235
DNA repair and recombination proteins [BR:
aru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ASPU41_07235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AOT05411
UniProt:
A0A1C9WVY0
LinkDB
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Position
complement(1551450..1553942)
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AA seq
830 aa
AA seq
DB search
MVVTNLDKVMYPETGTTKADVLAYYAAVAPVLIAAAANRPATRKRWVHGVGTADAPGEMF
FQKNLDHSTPGWVPRASIMHKERTIQYPLVNDPATLAWLAQIAALEIHVPQWRVDSHGNA
LPPDRLVLDLDPGEGAGLAECAEVARLARTILQDVGLDPVPVTSGSKGIHLYAALDGTQS
SEQISDFAHELARSLEADHPELAVSDMKKTLRTGKVLVDWSQNSAAKTTIVPYSLRGRLR
PTVAAPRYWRELSSPSLHQLDYQEVLQRVKSGKDPFAVISGRGRPGARHNGHPGDAPGEA
PGDGGDTDPRLERYRTKRDSASTPEPFSAERYRAEAAEGTVREKFVIQEHHASRLHYDFR
LERDGVLVSWALPKGVPTSKTKNHLAVQTEDHPMDYADFEGTIPKGQYGAGTVSIWDRGY
YECEKWIAGKEVIVTLTGQDEGGLGGTRRFALIHTGRADDQWLIHLMDPPGSKKGHAQAE
ASASDASAGAPDDDAQHDAPGLSGAAARESAAPGTSDFTPMLASAGTPADLSGKEWQFEL
KWDGVRALIVGDTKKIRLISRNGNDMSAVYPELTDRSCWPERDFVADGEIIAVGGSGRPD
FGLLQGRMKLTKASDIAKAQASTPVRLMLFDLLSENGRDLRRLPLSKRRAGLEAFFTPSG
CPVELSPLIDGDVRHILESAEELGLEGVMAKRTGGRYVGQRSRSWLKLKFERTQEVVVGG
WRPGKGGRGQSVGSLLLGIPDGSKLRYVGRVGSGFSDRELKELRQQLDALPRKTSPFLEV
PAADASDAHWVSARLVGEVTYGEWTGTGKLRHPVWRGWRLDKKPEDVVFE
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
ctggtggtcaccaatctggacaaggtgatgtatccggagaccggcaccaccaaggccgac
gttctggcctactacgccgcggtggcgcccgtgctgatcgcggccgccgcgaaccggccg
gccacccggaagcgctgggtgcacggcgtcgggacggccgatgcccccggcgagatgttc
ttccagaaaaaccttgaccattcgaccccggggtgggtgccccgggcctccatcatgcac
aaggagaggaccatccagtacccgctggtcaatgatccggccacgctcgcctggctcgcg
cagatcgcggccctcgagatccatgtgccgcagtggcgcgtcgactcgcatggaaatgcc
ctgcccccggaccggctggtgctggacctggatcccggcgagggggccgggctggccgaa
tgtgccgaggtggcgaggctcgcccgcaccatcctgcaggacgtgggcctggatcctgtg
ccggtaaccagcggcagcaagggcatccacctgtacgccgccctcgacggcacgcagagc
tccgagcagatctcggattttgcccatgaactggcacgctcgctggaagccgaccacccg
gaactggccgtgagcgacatgaagaagaccctgcgcaccggcaaggtcctggtggactgg
agccagaacagcgccgcgaagacaaccatcgtcccgtattccctgcgcgggaggctccgg
cctaccgtggcggcgccccggtactggcgcgaactcagctcgccgtcgctgcaccagctc
gattaccaggaggtcctgcagcgggtgaagtccggcaaggatccgttcgctgttatttcc
ggccgggggcggccgggggcccggcataacggccatccgggcgacgctcccggggaagca
cccggtgacggcggcgacaccgatccgcggctggaaaggtaccggaccaagcgggactcg
gcctcgaccccggagccgttcagcgcggagcggtaccgcgccgaggccgcagagggcact
gtccgggagaagttcgtcatccaggaacaccacgccagccggctgcactatgacttcagg
ctggagcgcgacggcgtgctggtgtcctgggcgctgcccaagggtgtccccacgagcaaa
acgaagaaccacctggcggtccagaccgaggaccacccgatggactacgcggacttcgag
ggcaccattccgaagggccagtacggcgccggaaccgtcagcatctgggaccgcggctac
tacgagtgcgagaagtggatcgccggaaaagaggtcatcgttaccctcaccgggcaggac
gagggcggcctgggcgggacccgcaggttcgcgctgatccacaccggccgggccgacgac
caatggctcatccacctgatggacccgcccggctctaagaaggggcacgctcaagcggag
gcgtcggcgtcggacgcctccgccggggcgccggacgacgacgcacagcacgacgctccg
ggcctctccggcgcggcagcgcgggagagtgccgcccccggcacgtcggacttcactccg
atgctggccagtgccggaacccccgccgacctgtccggcaaggaatggcagttcgagctc
aagtgggacggggtacgtgccctgatcgtcggtgacacgaaaaaaatccgcctgatcagc
cgcaacggcaacgatatgtccgcggtgtatccggaactgacggaccgttcctgctggccg
gaacgggatttcgtcgccgacggggagatcatcgccgtcggcggttcggggcgccccgac
ttcgggctgctgcaggggcggatgaagctcaccaaagcctccgacattgcgaaggctcag
gcgtcgacgccggtgcggctgatgctgttcgacctgctgtccgagaatggcagggacctg
cgccgcctcccgttgagcaaacggcgggccgggctggaagcgttcttcaccccttccggc
tgcccggtggaactctccccgctgatcgacggcgatgtccggcacatcctggaaagcgcc
gaggagctggggctggagggcgtgatggccaagcgcaccggcggccggtacgtggggcag
cgcagcaggtcctggctcaaactcaagttcgaacgcacccaggaggtggtggttggcggc
tggcggccgggaaagggcggacgcgggcagtccgtgggttcactcctgctggggatcccg
gacggttccaagctgcgctacgtcgggcgggttggcagcggattcagcgaccgggagctc
aaggagcttcgccagcagcttgatgcgctcccgcggaagacctcgccgttcctggaggtt
ccggcggccgatgcctcggacgcccactgggtgagcgcccggcttgttggagaggtcacc
tatggggaatggacgggtaccggcaagctccggcacccggtgtggcgcggctggcggctg
gacaagaagcctgaggacgtggtcttcgaatag
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