Arthrobacter sp. U41: ASPU41_13010
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Entry
ASPU41_13010 CDS
T05053
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
aru
Arthrobacter sp. U41
Pathway
aru03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ASPU41_13010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aru03400
]
ASPU41_13010
Enzymes [BR:
aru01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ASPU41_13010
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ASPU41_13010
DNA repair and recombination proteins [BR:
aru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ASPU41_13010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-TFIIB
zf-FPG_IleRS
Cys_rich_KTR
Ribosomal_S13
OrfB_Zn_ribbon
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AOT04099
UniProt:
A0A1C9WSW4
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All DBs
Position
complement(2857302..2858171)
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AA seq
289 aa
AA seq
DB search
MPELPEVAALTDFLAGHLRGAVVTKVQLVSFAVLKTADPPFSGLEGRTVTGVRRFGKFVS
LEADGLYFVFHLARAGWVRFTDAPTGIPLRMGKGHLAARLSFSSGTGPLGLDLTEAGTKK
SLAIYVVRDPHEVPGIAALGPDPFSPGFDVDALAAILAASSQQIKGVLRSQSVIAGIGNA
YSDEILHAARISPFAIARSLDRDAVRVLYDAIHSILGTALREAAGKAPHELKDTKRSHMR
VHGRTGEACPVCGDTVREVSFADTALQYCPGCQTKGKILADRRTSRFLK
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagcttccggaagtcgcggccctgacggattttctcgccgggcacctgcgcggg
gccgttgtcacgaaggtccagctcgtctctttcgcggtgctcaaaacggcggatcctcct
ttctccgggctggagggcaggaccgtgaccggggtgcgccgctttggcaagtttgtcagc
ctggaggccgacgggctgtatttcgtctttcacctggcccgggccggctgggtccgcttc
accgacgcgcccaccggtatcccgctgaggatgggcaagggacatcttgcggcgcggctt
tcgttttccagtggcaccggcccgctgggcctcgacctgaccgaggccggcacgaaaaag
agcctggccatctacgtggtccgggatccgcacgaggtgcccggaatcgccgcgctggga
cctgatccgttcagtcccggcttcgacgtcgatgccctggcggcgatccttgctgccagt
tcccagcaaatcaagggtgtgctgcggagccagagtgtgattgccggcatcgggaacgcc
tacagcgacgagatcctgcacgcggcgaggatctcaccattcgccattgcccggtccctg
gaccgggatgcggtccgggtgctctacgacgccatccacagcattctgggcacggccctg
cgggaagccgccggcaaagcgccccatgagctcaaggacaccaagcggagccatatgagg
gtccacggccggaccggcgaagcgtgtccggtgtgcggggacaccgtccgcgaggtgtcc
ttcgcggacactgccctgcagtactgccccggctgccagacgaagggaaagatcctggct
gaccgccggacctcgcgcttcctgaagtag
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