Arthrobacter sp. U41: ASPU41_14865
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Entry
ASPU41_14865 CDS
T05053
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
aru
Arthrobacter sp. U41
Brite
KEGG Orthology (KO) [BR:
aru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aru03019
]
ASPU41_14865
Enzymes [BR:
aru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ASPU41_14865
Messenger RNA biogenesis [BR:
aru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ASPU41_14865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
AAA_11
AAA_16
HA2_N
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AOT04409
UniProt:
A0A1C9WTS2
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All DBs
Position
3267951..3270632
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AA seq
893 aa
AA seq
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MTSPAVPLTPAPAPFDLGVIGSGLAFAQSLDELAEALRAGGQSATAVVQAPPGTGKTTLV
PPLLANLGLASRAVAGDRQQREPLQRIIVTQPRRVAARSAARRLAALDGSRLGDRVGYTV
RGERQTGPGTLIEFVTPGILLNRLLADPGLETAGAVVLDEVHERGIETDLLLGMLTEVRQ
LRGDLTLVAMSATLDAPRFAALIGAGADAGDPDGGGPAPVVDCPSALYPLKVDWVPAAAP
RLDERGVARAFLDHVAATAASAHAEAAASGRDVDALVFVPGAREVSYVAGRLRAQTRAEV
LELHGQIGPAEQDRAVSGREPGGSPRIIVSTSLAESSLTVPGVRLVIDSGLFREPRRDAS
RGMSGLVNVSCSRASAEQRAGRAARQGPGRVVRCYDQKTFGAAPAHQTPEIAVADLTGAA
LVLACWGSPGGRGLALPDAPPQAAMDEAVEVLRELGAVAPDGLATDLGKLLARVPADPRL
ARALLDGAATVGSRTAAEAVALVSGDQRAPGADLPRLLAALRAGSDPGSRRWKEDVRRME
TIARQESPGVDSPPLAAAVTAADAVGFVVALAFPDRVARRVPGEGPERYLLSSGTRAGLP
AGSSLSRHEWLAVAEVSRAQGRDAAGTGAVIRSAAPLTGDTAEAAARHLLSDTVEARFGQ
GRVTARKERRLGAIVLSSTPVRPSAGEGRAAVARALAKEGLGTIGWSTAADALRRRLALL
RRQLGDPWPDVSDQALLARLDQWLAPELEALAGGAATSGIDLADPLRRLLPWPDASRLAE
LVPERIEVPSGSWVKIDYPDVEDDGGRPVVAVKLQECFGWDRTPRLVGGRVPVLFHLLSP
ARRPLAVTDDLASFWSGPYAQVRSEMRGRYPRHPWPEDPWTAPATARTKNRSR
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
gtgacttctccagccgttccgctgacccctgctcccgcgcccttcgacctgggggtcatc
gggtccggtctggcgtttgcgcagtcgctcgacgagctggccgaagccctgcgggccgga
ggccaatccgcaaccgccgtggtgcaggcgccgccagggacgggcaaaacaaccctggtt
ccgccgctgctggccaacctcgggctggccagccgtgctgtggccggcgaccggcagcag
cgggagcccctgcagcgcatcattgtcacccagccgcgccgggtcgccgcgcgctcggcc
gcccgccgcctcgccgcgctggacggcagccggctgggggaccgcgtcggatacacggtc
cgaggcgaacgccagaccggcccggggaccctgatcgaatttgtcaccccgggcatcctg
ctgaaccgcctgctcgcagatccgggactggaaaccgccggcgccgtcgtccttgacgaa
gtgcacgaacgcggcatcgaaaccgacctgttgcttggcatgctcaccgaggtccgccag
ctgcgcggcgacctcacccttgttgccatgtccgccacccttgacgcaccgcgcttcgcc
gccctcatcggagcgggtgccgacgcgggggaccccgacggcggcgggccggcgccagtc
gtcgactgtccgtccgcgctgtaccccctcaaggtggactgggtccctgccgcggcgccc
cggcttgatgaacggggggtggcgcgcgccttcctggaccatgtggcggccaccgccgcc
tcggcgcacgccgaggcggcggcatcaggccgggacgttgacgccctggtgttcgtgccg
ggggcccgggaagtgtcctatgtcgcaggccggctccgcgctcagacccgtgccgaggtc
ctggagctgcacggtcagatcgggccggctgagcaggaccgcgccgtctccgggcgggaa
cccggcggcagcccgcggatcatcgtatcgacatccctcgccgaatcctccctgaccgtc
cccggcgtccggctggtcatcgactcgggcctgttccgtgaaccccggcgggacgcgagc
cgcggaatgtccgggctcgtgaacgtgtcctgctcccgcgcttccgccgagcagcgcgcc
gggcgtgcggcccgccaggggcccggacgggtggtccgctgctacgaccagaaaactttc
ggcgccgcacctgcccaccagacaccggagatcgccgtcgcggaccttacaggggctgcg
ctggttctcgcctgctggggatcacccggcggccggggactggccctgccggacgccccg
ccgcaggccgcgatggacgaggcagttgaggtgctgcgggaactcggtgcggtggctccg
gacggcctcgccaccgatctcggcaagttgcttgccagggttcccgccgatccccggctg
gcccgggcactgttggacggggccgcaaccgtgggcagccgcaccgccgcggaagccgtc
gccctggtctccggggaccagcgcgcccccggagccgacctcccgcgcctcctggccgcc
cttcgcgcgggcagcgatccggggtcccggcgctggaaggaggacgtccgccggatggag
acgatcgcccgccaggagagtcccggcgtcgactcccctcccttggcggcggcggtgacc
gccgcggacgcggtcggcttcgtcgtcgcactggccttccctgaccgtgtcgcgcgccgg
gttcccggcgaggggccggagcgctacctgctcagctccgggacccgggccggccttccc
gccggcagctccctgtccaggcacgaatggctcgccgttgccgaggtctcccgggcccag
gggcgcgacgcggccggcaccggcgccgtcatccgttccgctgccccgctgacgggggac
acggctgaggcggccgcccggcacctcctgtccgacaccgtggaggcccggttcggccag
ggccgggttaccgcccggaaggagcgccggctgggtgcgatcgtgctgtcctccacaccc
gtccgtccgtccgccggggagggccgggcagccgtggcacgggccctggcgaaggaaggg
ctgggaaccatcggatggtcgacggcggcggatgccttgcgccgccgtctggccctgctg
cgccgccagctcggggatccctggccggacgtgtcagatcaggcgctgctggcccggctc
gaccagtggctggctccggaacttgaggcgctggccggcggtgccgccacgagcgggatc
gacctggcggatccgctccggcgcctgctgccatggcccgacgcctcccggctcgctgag
ctggtgccggagcggattgaggtgccgagcggttcctgggtgaagatcgactaccccgac
gtggaggacgacggcggccgcccggtggtggccgtcaaactgcaggagtgctttggctgg
gaccggacgccgcgcctcgtcggcggccgggtgccggttctgttccatttgctctcgccc
gccaggcggcccctggccgtgacggacgacctcgcctcgttctggtccgggccctacgcg
caggtccgttccgagatgcggggccggtacccccggcacccctggccggaggatccgtgg
acggcgccggcgaccgcccgaaccaagaacaggagcagatag
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