Arthrobacter sp. U41: ASPU41_17675
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Entry
ASPU41_17675 CDS
T05053
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aru
Arthrobacter sp. U41
Pathway
aru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASPU41_17675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aru03019
]
ASPU41_17675
03009 Ribosome biogenesis [BR:
aru03009
]
ASPU41_17675
Enzymes [BR:
aru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ASPU41_17675
Messenger RNA biogenesis [BR:
aru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ASPU41_17675
Ribosome biogenesis [BR:
aru03009
]
Prokaryotic type
rRNA processing factors
ASPU41_17675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
AOT04876
UniProt:
A0A1C9WUC8
LinkDB
All DBs
Position
complement(3881768..3884977)
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AA seq
1069 aa
AA seq
DB search
MDNDQVVTGNEHALVTAAAAVTVDAAETAAAATPPKRPVRTRRKALPKAETAADTAAPAD
GAEAAAAEAPAAEAKAKAPVRRSRARKVAEPAEPLPAFADEAASAALAEAPAAEAAEAPV
EKPVRRRASRAKAAAPAVEAPAAETPAADETAQAAQTPAAAPQAPAAADTAAPPAPVTAT
PEEAPSAASSLFLEPGFVTSMIFQAPDLTSAARPATAPAAAAEAEEAEEDEGEEVDGEDA
GSRRRRRSRGRRGRSSRGSENETGAGDDSEGAGDGEEEGSEEPLEDGVTSRRRRRRRRGD
QDLELTGGEDDDPPNTVTRVRAPRAATEAPVNNRVTSLKGSTRLEAKKQRRRESRDTGRR
RTVITEAEFLARRESVDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGK
VQNVLPSMEAAFVDIGRGRNAVLYAGEVNWESVNLEGKQRRIENALKSGDSVLVQVTKDP
VGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDVERNRLKRILKDRLPEDAGVIVRT
AAEGASEEELTHDINRLRAQWEGIEGQSTSTKILAPELLYGEPDLTIKVVRDVFNEDFSK
LIVSGEEAWDTIEAYVTYVAPDLVGRLEKWTKDTDIFAAWRIDEQIHKALDRKVFLPSGG
SLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFI
DMVLESNRDLVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCETCA
GRGIVTHDEPVEHRRANVVAAEHHVPRTEHQQPAARTERKSRRRGRGGQGQEDQYVPAAV
HPEPTEAERHAKAEATRAALANIAAAAHAAHLHDGEAATAADAETRQAAVDAVVELAATE
EAAGRPAAVLTFGGEQVALPFVEHADKANAPALTLDLLTEAFAHLGEAEAAQAPAAKSAA
ATAPAARSAAAAPARTGGTGPGRTQAPGSQTEAEAEAGTSRARRGRRNRSASRAQGAANE
TSVEQRQETPHAAAVSVHEAKVPAATTPAAKPAASEPIILGVGVPASEL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggataatgaccaggttgtaacgggtaacgaacacgcgcttgtcaccgcagcagcagca
gtaactgttgacgcggcggaaacagcggcagcagccacgccgccgaagcggccggtccgg
acccgccgcaaggcccttcccaaggccgagaccgcagctgacacagcagcccccgccgac
ggcgccgaagctgcggccgcagaagctccggccgccgaagccaaggccaaggcacccgtc
cgccgctcccgcgcccgcaaggttgcagaaccggccgaaccccttccggccttcgctgac
gaagcagcctcggctgccctcgccgaagcgccggcagccgaggccgctgaggcgccggtc
gagaagcccgtccgacgccgcgccagccgcgccaaggccgctgcgcccgccgtggaagcc
cccgccgccgagacccccgcagcggatgaaactgcacaggctgcgcagacgcccgccgcc
gcgccgcaggcccccgccgccgcggacacagcagcccccccagcacccgttacggcgacg
cccgaagaagcaccctccgccgcctcctcgctcttccttgagccgggattcgtcacctcg
atgatcttccaggcccccgacctgacctccgccgcgcgccctgccacggcccctgcggcg
gcggcagaagccgaagaagccgaggaagatgaaggcgaggaggtcgacggcgaagatgcc
ggcagccgccgccgtcgtcgcagtcgcggccgccgcggacgcagcagccgcggatccgag
aatgagaccggcgccggggacgactccgaaggcgccggagacggggaagaagagggctcc
gaggagccgcttgaagacggcgtgacctcgcgccgccgccgccgccgccgccgcggtgac
caggacctggaactgaccggcggggaagacgacgatccgcccaacacggttacccgcgtc
cgcgcaccccgtgcggccaccgaggcgccggtcaacaaccgcgtcacgtccctcaaaggc
tccacccggcttgaggcgaagaagcagcgccgccgtgaatcccgcgataccggtcgccgc
cgcaccgtcatcaccgaggccgagttcctggcccggcgcgaatcggttgaccgccagatg
atcgtccgccagcgcgacgacagaatccagatcggcgtcctcgaggacggcgtgctggcc
gagcacttcgtctcgaagacccagcaggattccctgatcggcaacgtgtacctgggcaag
gtccagaacgtgctgccgtcgatggaagcggccttcgtggacatcggacgcggccgcaac
gccgtgctctacgccggcgaagtcaattgggagtccgtcaacctcgaaggcaagcagcgc
cggatcgagaacgcgctgaagtccggcgactcggtactggtccaggtcaccaaggacccg
gtcggccacaagggcgcacgcctcacgagccagatctccctgcccggccgctacctcgtc
tacgttcccggcggttccatgaccggaatctcccgcaagctgcccgacgtcgaacgcaac
cggctcaagcggatcctcaaggaccggctgccggaagatgccggcgtcattgtccgcacc
gcggccgagggcgcgtccgaggaagagctcacgcacgacatcaaccgcctccgcgcccag
tgggaaggcatcgagggccagtcgacctccaccaagatcctcgcccccgagctgctctac
ggcgaacccgatctgaccatcaaggtagtccgtgacgtcttcaacgaggacttctccaag
ctgatcgtctccggcgaggaagcctgggacaccatcgaggcctacgtcacctacgtggcg
cccgacctcgtgggccggctcgagaagtggaccaaggacacagacatcttcgcggcctgg
cgcatcgacgagcagatccacaaggcgctggaccgcaaggtcttcctgccctccggcggc
tccctcgtgatcgaccgcaccgaggccatgaccgtggtggacgtcaacaccggcaagttc
accggcagcggcggcaaccttgaggaaaccgtcaccaagaacaacctcgaagctgccgag
gaagtcgtccggcagctgcggctccgcgatatcggcggcatcatcgtcatcgacttcatc
gacatggtgcttgaatcgaaccgcgacctcgtgctgcgccgaatggtcgagtgcctgggc
cgggaccgcaccaaacaccaggtggcggaggtgacctccctgggcctcgtgcagatgacg
cgcaagcggatgggcaccgggctgctggaagtcttcggcgaacagtgcgaaacctgcgcc
ggccgcggcatcgtcacccacgacgagccggtcgagcaccgccgcgccaacgttgttgcc
gccgagcaccacgtcccgcgcacggaacaccagcagccggccgcgcggaccgaacgcaag
agccggcgccgcggcaggggcggccaggggcaggaggaccagtacgtcccggcagcagtc
catcccgagccgaccgaggccgaacgccacgccaaggccgaggcaacccgggcagcgctg
gcgaacatcgccgcggcggcccacgccgcgcacctgcatgacggggaggcagccaccgct
gccgacgccgagacccgccaggccgctgtcgatgcggtcgtcgagctggccgccacagag
gaagcagcgggacggcccgccgccgtgctgacgttcggcggtgagcaggtcgccctgccg
ttcgtggagcacgccgacaaggccaatgcgcccgcgctgaccctggacctgctgacagag
gccttcgcccacctgggtgaggccgaggcagcccaggcgccggcggcaaagtcagccgcg
gcgacggccccggccgcccggtccgcggcggcagctccggcgcgcaccggcggaaccggc
ccgggacgcacccaggcgccgggttcccagaccgaggcggaagccgaggccggaacctca
cgtgcccgtcgcggccgccgcaaccggagcgccagccgcgcccagggtgcagccaacgag
acctccgtggaacagcggcaggaaactccgcacgccgcagcggtctcggtgcacgaggcg
aaggtaccggcagcaacaacgccggccgccaagcctgctgcgagcgagccgatcatcctt
ggcgtcggagttccggcctcggagctctaa
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