Arthrobacter sp. U41: ASPU41_19125
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Entry
ASPU41_19125 CDS
T05053
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aru
Arthrobacter sp. U41
Brite
KEGG Orthology (KO) [BR:
aru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aru03019
]
ASPU41_19125
Enzymes [BR:
aru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ASPU41_19125
Messenger RNA biogenesis [BR:
aru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ASPU41_19125
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
AAA_23
nSTAND3
PhoH
SRP54
Motif
Other DBs
NCBI-ProteinID:
AOT05114
LinkDB
All DBs
Position
4193480..4197529
Genome browser
AA seq
1349 aa
AA seq
DB search
MTLHISYPAELPVSERREDLMAAIAANQVTIIAGETGSGKTTQIPKMCLELGLGENGLIG
HTQPRRLAARTVAERIAEELGVEIGQEVGFQVRFTGQVSRETKVKLMTDGILLAEIQRDK
LLRKYNAIIIDEAHERSLNIDFILGYLKRILPQRPDLKIIITSATIDPQRFAKHFGTEEE
PSPIIEVSGRTYPVEIRYRPLSQPAGGAAGDSADDAAAAASDDELEEDRDPLDAVCDAVD
ELAQEAPGDILVFFSGEREIRDAAEALNGRIQSNRKLAGTEVLPLFARLSLEEQHKVFHP
GSKRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRSG
RCGRVSDGIAIRLYSEEDFESRPPFTDPEILRTNLAAVILQMTAMGVARGPKDVENFPFV
EPPDSRAINDGVTLLRELGALSAARPQEETGDGDGRPGRRPAAGRSGAGLTAVGQQLAQL
PVDPRLGRMIVESGKRGCVREVMILAAALTIQDPRERPQGDGSGKQQLAAEKHARFRDEN
SDFTGFLNLWNYLQEKQQELSSTAFRRLCRAEFINYLRVREWQDLFAQLRQLARPLGISL
NNNRLADPVGNHEGIHISLLSGLLSHVGILDERKREYAGARGSRFAIFPGSALFKKSPTF
VMAAELVETSRLWARVAAKFDPLWVEQVAPDLVKRSYSEPHWSKKMGAVMAHEKVTLYGV
PIIPSRRINYGKVDPELCRELFIRHALVEGDWQTHHKFFHRNRALLLEVEELEARMRRRD
ILVDDETLFEFYDARIGKEVVSERHFDKWWKDARQHDPALLDFDQALLISEDADALDDSA
YPKTLLHKGFDLPLSYEFHPVAPGSPPNPSDGVTAEVPVLFLNQLDDAAFRWLIPGQRVE
LVTALIKSLPKQVRKNFVPAPDVSRQAVAALEADFDPATDDLEAALELVLRRIRGQVIPP
NSWHWEAVPPHLRVSFRVVDSQGKVLDEGKDLGVLQERLAPATRRAIAESLGATPATTAP
TSNGRSNGRSSGNATGKSAGRAAGTAAGTAASAVSGASTGFAEQAGLTSWPVGTVPRQVQ
GTVKGHIVTGYPALVDEGSSVALRLFQTSSEQEQAMRGGVIRLLALRVPPPDRYVLEHLN
NTEKLTFSQNPHGSVTALIADCALAAIDKLTPAELPWDEASFNALYEKVRAELIDTVFTV
TAVVERILASTRRIEKALKGTTSLALISALNDIRSQLEQLVFPGFVARTGYSQLSQLPRY
LAAIEKRLEKLPTNVQRDAQSMTAIQALEDDYDDAASALLPGRRAGAELTQVRWMIEELR
VSLFAVELGTAYSVSEKRIRAVLNKALAA
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgacactgcatatctcctaccccgccgagctgccggtctccgagcgccgcgaggacctg
atggccgccattgcggccaaccaggtgaccatcatcgccggcgagaccggttccggtaag
acgacccagattcccaagatgtgcctggagctgggcctcggcgagaacgggctgatcgga
cacacccagccgcgccggctggccgcccgcacggtggccgagcgcatcgcggaggaactc
ggcgtcgagatcggccaggaggttggcttccaggtccgcttcaccgggcaggtcagccgc
gagaccaaggtcaagctcatgaccgacggcatcctgctggccgagatccagcgcgacaag
ctgctgcgcaagtacaacgcaatcatcatcgacgaggcacacgagcgcagcctcaacatc
gacttcatcctcggatacctcaaacggatcctgccgcagcggccggacctgaagatcatc
atcacctcggccaccatcgatccgcagcggttcgccaagcacttcggcaccgaggaagag
ccttcgccgatcattgaggtctcagggcgcacctatccggtcgagatccgctaccggccg
ctgtcccagccggccggcggggccgccggtgacagcgccgacgacgctgcagctgcggcc
tccgatgacgagctggaagaggaccgcgatccgctggatgccgtctgcgacgccgtcgac
gaactcgctcaggaggctcccggcgacatcctggtcttcttctccggcgaacgcgaaatc
cgtgacgccgcggaggccctcaacggcaggatccagtccaaccggaagctggccggcacc
gaggtgctccccctcttcgcccggctgagcctggaggaacagcacaaagtcttccacccg
ggcagcaagcgcaggatcgtgctcgccaccaatgtcgcggagacctccctgacggtcccc
ggcatcaagtacgtcattgacaccggcaccgcgcgcatctcccggtattcgcaccgcacc
aaggtccagcgccttccgatcgaacgggtctcccaggcctccgccaaccagcgctcgggc
cgttgcggccgtgtctccgacggcatcgcgatccggctgtactcggaggaggacttcgag
tcccggccgccgttcaccgaccccgaaatcctgcgcaccaacctcgccgccgtcatcctc
cagatgaccgcgatgggcgtcgcccgcggaccgaaggatgtcgagaacttcccgtttgtg
gagccgcccgactcccgggccatcaatgacggcgtcaccctcctgcgcgaactgggcgcc
ttgagcgccgcgcgtccccaggaggagaccggcgacggcgacggccgccccggccgccgg
ccggcggccgggagaagcggcgccgggctgaccgccgtcgggcagcagcttgcccagctg
ccagtggacccgaggctcggccggatgatcgttgagtccggcaagcgcggctgcgtccgc
gaggtcatgatcctcgccgcggcgctcaccatccaggatccgcgcgagcgtccccaaggg
gacggctcaggcaagcagcagctcgccgcggagaagcatgcgcgtttccgggacgagaac
tcggacttcaccggattcctgaacctctggaactacctgcaggagaagcagcaggagctc
tcctccacggcgttccgccggctctgccgtgccgagttcatcaactatctgcgcgtgcgc
gagtggcaggaccttttcgcccagctgcgccagctcgcccgtccgctggggatcagcctg
aacaacaaccgcctggcagatccggtgggcaaccatgagggcatccacatcagcctgctc
tcagggctgctgagccatgtgggcatcctcgacgagcgcaagcgcgagtacgccggcgcc
cgcggcagccgctttgcgatcttcccgggctcggcgctgttcaagaagtcccccaccttc
gtgatggccgctgaactcgtggagacaagccggctgtgggcccgggtggccgctaaattc
gatccgctctgggtcgagcaagtggcgccggatctggtcaaacgcagctacagcgaaccg
cactggtccaagaagatgggcgcggtgatggcccacgagaaggtcacgctgtacggcgtg
cccatcattccgagccgccggatcaactacggcaaggtggatccggagctctgcagggaa
ctgttcatccggcatgccctggtcgagggcgactggcagacccaccacaagttcttccac
cgcaaccgggccctgctccttgaggtcgaggagcttgaggcgcggatgcggcgccgggac
atcctggtggacgacgagacgctcttcgagttctacgacgcccggatcggcaaggaggtc
gtgtccgaacgccacttcgacaagtggtggaaggacgcccggcagcacgatcccgcgctg
ctcgatttcgaccaggcgctgctgatcagcgaggacgccgacgccctggatgactcggcc
tacccgaagaccctgctgcacaagggttttgacctgccgctgagctacgagttccacccc
gtcgcgccggggtcgccgcccaacccgtcggacggcgtcaccgccgaggtgcccgtgctg
ttcctgaaccagctcgacgacgctgcgttccgctggctgattccgggccagcgcgtggag
ctggtcacggccctgatcaagtcgctgcccaagcaggtgcgcaagaacttcgtgccggct
ccggacgtgtcccggcaggccgtcgcggccctcgaggcggacttcgatccggcaaccgac
gatctggaggccgcactggaactggtcctgcggcggatccgcggccaggtcatcccgccg
aattcctggcactgggaagcggtgccgccgcacctgcgggtgagcttccgcgtcgtggat
tcccaggggaaggtcctggacgagggcaaggacctcggcgtgctgcaggaacggctggcg
ccggccacgcgccgggcgatcgccgagtcgctgggcgccacgcccgcgacgacggctccg
acatcgaacggccggtccaacgggaggtccagcggcaatgcgaccggcaagtcggcaggc
cgggccgcaggcacggcagccgggaccgcggcttccgccgtttccggcgcttcgaccggt
ttcgccgagcaggcggggctgacctcctggcccgtcggaacggtgccgcgccaggtccag
ggcacagtgaaagggcatattgtcaccggctaccctgcgctcgtggatgagggcagttcc
gtcgccctaaggctcttccagacaagctccgagcaggaacaggccatgcgcggcggcgtc
atccgcctgctcgccctgagggtgccgccgccggaccgctacgtcctggagcacctgaac
aataccgagaagctgaccttcagccagaacccgcacggttccgtcacggcgcttattgcc
gactgcgccctcgccgccatcgataaactcacccccgccgagctgccgtgggacgaggcg
tccttcaacgcactctacgagaaggtccgcgcggaactgatcgacacggtcttcaccgtc
accgccgtcgtggagcgcatcctggccagcacccggcggatcgagaaggcgctcaagggc
accacgagcctggccctgatcagcgccctcaacgacatcaggagccagctggaacagctc
gtgttccccggttttgtggcacgcacgggctacagccagctcagccagctgccgcgctac
ctcgcggcgatcgagaagcggctggagaaactccccaccaacgtccagcgggatgcccag
agcatgacggcaatccaggcgctggaggacgattacgacgacgccgcgtccgcactgctc
ccgggccggcgggccggagccgagttaacccaggtccgctggatgatcgaggaactccgg
gtgagcctgttcgccgtcgaactcggtaccgcctattcggtctccgagaagcggatccgc
gctgtgcttaacaaggcgctggcggcttaa
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