Altererythrobacter rubellus: QQX03_09785
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Entry
QQX03_09785 CDS
T09134
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
arue
Altererythrobacter rubellus
Brite
KEGG Orthology (KO) [BR:
arue00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arue03019
]
QQX03_09785 (hrpB)
Enzymes [BR:
arue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QQX03_09785 (hrpB)
Messenger RNA biogenesis [BR:
arue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QQX03_09785 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
Flavi_DEAD
AAA_30
HA2_N
AAA_19
ResIII
Cas3-like_C_2
CON_HrpB
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WIW95236
UniProt:
A0A9Y2B742
LinkDB
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Position
complement(1948684..1951116)
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AA seq
810 aa
AA seq
DB search
MLLELPIDEKLGELTTALADSGAAVLVAPPGAGKTTAVAPALLEEAWCTGQIILTSPRRV
AARAAAERMAEILGEKPGETVGYVTRLDSKTSAKTRVLVVTEAIFVNRIIEDPELAGISV
VLFDEAHERHLDSDLGLALALESRAVLRNDLRILVMSATIDGARFAKLLGNRAPVIESEG
RAYPLRIEWLGSRPDARIEDAMADAVMQAWRETEGELLAFLPGVGEIERTRERLEARLPD
VPILPLHGQVQPAQQRAAIKRDAGGHRRIVLATDIAETSLTLDGVSVVIDSGLARYAEFD
KAAGTTRLVTRRASQAASAQRAGRAARQGPGVAYRLWEEGGHAGRPAFAPAEIETADLAP
LVLKLAKWGSSDHASLAWIDPPPEAAIATARTSLLKMGALDEDGRITAQGNQIASLPLDP
FAAAAVLFGAEVSQAFDAAKLVLLVQERGLGGRGEDLLQRLDHWNGDRGKRAEASRKLAQ
GWAKAAGRLISGTEPEPRNPALFLAFARPDFVARRRDKSGEQWLSAGGRGFQLDPASPLA
RAEWIVIGDAQGQAKGARIAAAAELSVQDIEEHLQYLVEKRSVINWNNEEKRAEARLERR
LGAIILASGPDPAPDPEAIVDKLVEKALESLGELLPADLLARGKFVQIEALELQRLRDSA
DTWLRPILYGRRDLDVPRGKLIEAILNQLDWGTRQQLDRLAPREFTSPAGTCHTIDYAGD
DAPSVEVRVQALFGLDQHPMIGRTPLLMKLASPAGRPIQSTRDLPRFWRGSWADVKKDMK
GRYPKHRWPDEPWVEKPSLKTKNAFNRSEN
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgcttctcgaactgccaatagatgagaaactcggagagttgacgacagcactggcagat
tctggcgctgcggtgcttgttgcgccgccgggtgcgggcaagactacggctgtggccccg
gccctgcttgaagaagcctggtgcactggacagataatcctcacttcaccgcggcgagtt
gcggctcgcgcagcagcagaacgtatggcggaaatactgggcgagaaacctggtgaaaca
gtcggttatgtgacccggttggatagcaaaacatcggccaaaacgcgcgttctggtcgta
acagaggccatcttcgtaaaccgtatcatcgaagaccctgaactggcaggcatttccgtt
gtcttgttcgacgaagcgcatgagcggcatctggacagcgatcttggtctggcgctggcc
ttggaaagccgcgccgtcttgcgcaatgacctgcgcatattggttatgagcgcaacgata
gatggtgcgcgctttgcgaagcttctggggaatcgcgcaccagttatcgaaagtgaaggg
cgcgcgtatcctttacgtattgaatggctgggttcgcgacccgatgcgcgcattgaagac
gcgatggccgatgcggtgatgcaggcttggcgagagacagagggggaattgctggcgttc
cttcctggtgtcggtgagattgaacgcacaagagaacgcctggaagcacgtttgcctgat
gtgcccatccttccactgcacgggcaagttcagcccgcgcagcagcgcgcagcgatcaaa
cgcgatgcgggcggtcaccgacggattgtgctcgcaacagacattgccgagacttcgctg
acgctggacggagtatctgtcgtcatcgatagcggtctcgcgcgatatgccgaattcgac
aaggcagctggaactactcggctggttacccgccgcgccagtcaagcggcatcagcgcaa
agggccggccgcgccgcccgccaagggccgggcgtggcctaccgcttgtgggaagaaggt
gggcatgctggccgcccagcgttcgctcccgctgagatcgagacagccgatctggcgcct
ctggtcctgaaacttgcaaaatggggaagttctgaccatgcgagcctggcctggatcgat
cccccaccggaagccgcaattgccaccgcgcgcacttctctgttgaaaatgggggctctg
gacgaagacggcaggataactgcgcaaggcaatcagatcgcttcattgcccctagatccc
ttcgctgctgccgcggtgctattcggagcggaggtttcgcaagcgtttgacgcagcgaag
ttggttctgctcgtgcaggagcgcgggctcggcggtcgcggtgaggatctgcttcagcgc
ctggaccattggaacggcgatcggggtaaacgcgcagaagcctcgcgcaagcttgctcag
ggctgggcaaaggcagcggggcggttaatttcaggcacggaaccggagccacgcaatcca
gcacttttcctcgcatttgcgcggcctgattttgtcgcgagaagacgcgacaagtctggc
gagcaatggctgtcggctggtggcaggggctttcaacttgatcctgcttcacctctggcg
cgtgcggagtggatagttattggcgatgcgcagggtcaggcaaagggcgcgcggatcgcc
gcagcagcggaactgagcgtgcaagacatcgaagagcatcttcaatacctggttgaaaag
cgctcggtaataaactggaataatgaggaaaagcgtgctgaggcgcggctagagcggagg
ctcggtgcgatcatcttggcgagtggtccagaccccgcgccagacccggaagcgattgtg
gataagctagtggaaaaggcgttggaaagcttgggagaactcctgcctgctgacctattg
gcacgcggaaaattcgtacagattgaagcgcttgaactacaaaggctccgagacagcgcc
gacacatggctgagaccgatactgtatggacggcgcgatctcgatgtgccgcgcggaaag
ctgattgaagccatcctcaatcagctcgattggggcacgcgccaacagttggaccgattg
gctccgcgcgagttcacatcacctgccggaacatgtcacacgatcgattatgctggcgat
gacgctccatcagttgaagttcgtgtgcaggccctgttcggattggaccagcacccgatg
atcgggcgcacaccactgttaatgaagctggccagcccggctggccgtccgattcagtcg
acccgagatttgcccaggttttggcgtggcagctgggcagatgtgaagaaagatatgaag
gggcggtatccgaagcaccgctggcccgacgagccgtgggtggaaaaaccaagtctgaag
accaaaaacgccttcaatcgcagcgaaaactga
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