Agrobacterium rubi: G6M88_01105
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Entry
G6M88_01105 CDS
T08058
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
arui
Agrobacterium rubi
Pathway
arui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G6M88_01105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arui03019
]
G6M88_01105
03009 Ribosome biogenesis [BR:
arui03009
]
G6M88_01105
Enzymes [BR:
arui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G6M88_01105
Messenger RNA biogenesis [BR:
arui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G6M88_01105
Ribosome biogenesis [BR:
arui03009
]
Prokaryotic type
rRNA processing factors
G6M88_01105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
QTF99083
UniProt:
A0AAE7R0R3
LinkDB
All DBs
Position
1:230248..233202
Genome browser
AA seq
984 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEDHRRNDDFESANDAPNEQSSTASRS
VDLSQADQPDIGIVSATDAADETDAPAEIVAEPVETDVEVVETVAEEAPAEDEKPKKRVR
RPRTKKKTEADEASADAAPSDDGSEDDGSKGGEMAAMVDTDTISEEVEGLSRRGNDDDDD
DDDEHHEKEVIESVGAEDAMEEVPDRVSRKPRKQYRIQEVIKRRQILLVQVAKEERGNKG
AALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAG
ANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVS
GEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLII
NQTEALVAIDVNSGRSTREHSIEETAVQTNLEAAEEVARQLRLRDLAGLVVVDFIDMEEK
RNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGTGHV
RSESSIALHVLRGVEEYLLRNTTHNITVRCTPDTALYLLNHKRATIVDYEARFGVAIIIA
ADASVGAQHFAIDRGEAVENPVKIESLIQMLPAFEEEEDDIIIEADEDEDEEEVVVKAEK
TEARPAQADAAEDGKRKRKRRRRRRGKGSQNGTEAQGDSDDDTSADDQDDDAEGESDDEA
STSTLETTDGTSSDDGKRKRRRRGKRGGRRNRDENGNIIDEDGIEPETSEAVEDGAAAAA
IESVEETAVVEVVEAEAPTPTVEETEKPKKPRRTRKAKETAPEASAEAEPAVAPAPTPAP
VETVEPVVVDVTVSEAAIEEVGEASADLGTEVPAENAKPVRANRGENVSSSEPVVTSASA
STDGAEGDPSKPRKGGWWQRRGFF
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgacgcctcccatgaagaggagacacgcgtagtcgtcgtt
cggggaaaccggatcgaggaattcgattttgagtccgaacacaaaaaacaaatccgcggc
aatatctatcttgccaaggtgacacgcgtagagccttcccttcaggcagcattcgtcgat
tacggtggcaatcgccacggatttctcgcttttgcagaaattcacccggattattaccag
atcccccttgccgacaggcaggctctgctgagagcggaagccgaagatcaccgtcgtaac
gacgacttcgaatccgccaatgacgcgccaaacgaacaatcgtctacggcgtcgcgctct
gttgatctgtcccaggctgatcagccggatatcggtatcgtttcggcaaccgacgctgcc
gatgagaccgatgcacctgccgagattgtcgcagagccggtcgaaaccgacgtcgaggtt
gtcgagaccgttgctgaagaagcaccagccgaagacgaaaagccgaagaagcgcgttcgt
cgtccccgcacgaagaaaaagacggaagcagatgaagcatctgccgatgcagccccttcg
gacgatggttccgaagacgatggcagcaagggcggcgaaatggctgccatggtcgatacc
gacacgatttccgaagaagttgaaggtcttagccgtcgtggcaatgacgatgacgacgat
gatgatgacgaacatcacgaaaaggaagttattgaatccgttggcgccgaagatgcgatg
gaagaagttccggaccgcgtttcgcgtaagccacgcaagcagtaccgcattcaggaagtc
atcaagcgccgccagatccttctggttcaggttgccaaggaagaacgcggcaacaagggc
gctgcgctgacaacctatctgtcgctcgctggtcgttattcggttctcatgccgaacacg
gcgcgtggcggcggtatctcccgcaagatcacacagccgacggaccgtaagcgtctgaag
gaaatcgcccgcgatctggaagtgccacagggcatgggcgttattctgcgcacagccggt
gccaaccgcacgcgcgtcgaaatcaagcgcgacttcgaatatttgatgcgtctgtgggaa
aacgttcgcacgctgacgcttaactctacggccccttgcctggtttatgaagagggatcg
ctgatcaagcgttcgatccgcgatctctacaacaaggacatcagcgagatcatcgtatca
ggcgaagaaggctatcgtgaagcgaaagacttcatgaagatgctgatgccgagccatgcc
aaggtggttcagccttaccgcgacattcatccgatcttctcgcgttcgggcatcgaagcc
cagctcgaccgtatgttgcagccgcaggtgacgttgaagtccggtggctacctcatcatc
aatcagacggaagcgctggttgccatcgacgtgaactccggtcgctcgacccgcgaacat
tcgattgaagaaaccgccgttcagaccaacctggaagccgcggaagaagtggcacgccag
ctgcgccttcgcgaccttgccggtctcgtcgtcgtcgacttcatcgacatggaagaaaag
cgcaacaatcgctctgtcgaaaagaagctcaaggattgcctgaagaacgaccgcgcccgc
attcaagtcggccgcatctcgcatttcggccttctggaaatgtcgcgccagcgcatccgc
gcttcggttctggaatccacaacccaggtttgctcgcattgcggcggcacgggccatgtt
cgctccgaatcctccatcgccctgcatgttctgcgcggcgttgaagaatatctactgcgc
aacaccacgcacaacatcacggttcgctgcacaccggatacggcgctctatctgctgaac
cacaagcgcgcaacgatcgtcgattatgaagcccgcttcggcgttgccatcatcatcgcg
gctgatgccagcgtcggtgcacagcacttcgcgatcgatcgcggcgaagccgtcgaaaac
ccggtcaagatcgaaagcctcatccagatgcttcctgccttcgaggaagaggaagacgac
atcatcatcgaagccgatgaggatgaagacgaggaagaagtcgtcgtcaaggccgagaag
accgaagcacgtccggctcaggctgatgctgcggaagatggcaagcgcaagcgcaagcgt
cgtcgtcgtcgtcgcggcaagggcagccagaatggcaccgaggctcaaggcgattccgat
gacgacacgtcagccgacgatcaggacgatgatgccgaaggcgaatccgatgatgaggct
tcaacctctacactggaaacgactgatggcacctccagcgacgacggcaagcgcaaacgc
cgccgccgtggcaaacggggtggacgccgcaaccgtgacgaaaatggcaacatcattgat
gaggatggcattgagcctgaaacatctgaagctgtcgaagacggtgctgccgccgctgcg
atcgagagcgtcgaagaaacagccgtcgtagaagtagtcgaggccgaagcaccgacgcca
accgtggaagaaacggaaaagccgaagaagccacgccgcacccgcaaggcaaaggaaaca
gcacctgaagcatccgcagaagcagaacctgctgttgcaccggcaccaacccctgcgcct
gtcgaaaccgtcgagccagttgtcgtggacgtaacagtctccgaagcagccatcgaggaa
gtcggagaagcatctgctgatctgggaaccgaagtgcctgcggaaaacgcaaagcccgtt
cgcgccaaccgcggtgaaaacgtctcgtcctctgagccggtcgtcacttcagcctcggca
tcaaccgacggtgcagaaggcgacccatctaagccccgcaagggcggctggtggcaaaga
cgcggcttcttttaa
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