Agrobacterium rubi: G6M88_07790
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Entry
G6M88_07790 CDS
T08058
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
arui
Agrobacterium rubi
Brite
KEGG Orthology (KO) [BR:
arui00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arui03019
]
G6M88_07790 (hrpB)
Enzymes [BR:
arui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G6M88_07790 (hrpB)
Messenger RNA biogenesis [BR:
arui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G6M88_07790 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_30
ResIII
Flavi_DEAD
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTG00309
UniProt:
A0AAE7UPA0
LinkDB
All DBs
Position
1:complement(1656306..1658777)
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AA seq
823 aa
AA seq
DB search
MTEPRLPTLPVTEVLSEIGAALATRGQAVLSAPPGAGKTTLVPLYLLDQPWRGDGKIILL
EPRRLAARAAASRMASLLQENVGETVGYRMRLDNRISAKTRIEVVTEGVFARMVLDDPEL
SGVSVVIFDEFHERSLDGDFGLALALDVQAGLRDDLRILVMSATLDVERISALLKEAPVI
KSLGRSFPIDTRYDDRTGQARIEDKVARAILDAHSSEAGSILAFLPGQGEITRTLERLDG
RFGPETSVIPLYGNLSQREQDAAIRPTEPGKRKIVLATSIAETSITIDGVRVVIDSGLQR
LPVFEPSTGMTRLETVKVSRASADQRAGRAGRTEPGIAIRLWHVGQTAALPAFTPPQILA
SDLSGLALDLAHWGVTDPASLAFLDQPPQTALNEARALLTSLGALDATLAITPRGRKMRD
LAMPPRLSAMVIAAHDAGHGVEAAMLAVLLTEQGLGGSDIDLEERLRRFRYEKGERASAA
KGLAKRIASFLGGGAQSAAAEPITAGELLLHAYPDRIAFQRGGRGRYVMANGRGAELAET
ERLATEKMLVVADVTGRAAQPRILAAALICREDVEEHLPDAIRREDQLFFDKASGQVRAR
RVTRIGAIILEETPLGKPSGEKAALALANGIREHGLDIMTFSKEAQQLRQRLGFLHRTIG
EPWPDTSSEALVARLHEWFVPFQQDARSLQEIRSSGIMDGLLSLVPHAAQRELTKLLPTH
FEAPTGQRHAISYDGEEPTLTIRVQELFGLKQHPAVAGGKLPLLLELTSPAHRPIQTTRD
LPGFWSGSWKDVRADMRGRYPRHPWPEDPANAQPTNRVKPRGT
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaccaaggttgcccaccctgccggtaaccgaggtactgagcgagatcggcgcg
gcattggcgacgcgtgggcaagcggtgctgtctgcgccgccgggtgcgggcaagacgaca
ctggtgccgctttacctgctggaccagccatggcgcggcgatggcaagatcattctgctg
gagccgcggcggttggcggcgcgggcggcggcaagtcgcatggcgtcactactccaggaa
aacgtcggagagaccgtgggttacaggatgcggctggacaatcgcatttccgcgaaaact
cgcatcgaggtggtgacggagggtgtgtttgcccgcatggttctggatgacccggagctg
tcaggcgtatctgtcgtgattttcgacgagttccacgaaaggtccctcgacggcgacttt
ggtctggcgctggcgctggatgtgcaagcggggcttcgcgacgatctccgcatcctcgtc
atgtcggccacgctagatgtggagcggatcagcgccctgctgaaggaggcgcctgtcatc
aaaagcctgggccgcagtttcccgatcgacacacggtatgatgaccggacgggacaggcg
cggatagaagacaaggtcgcgcgggccattctcgacgctcactcatcggaggctggatcg
atcctcgcttttttgcccgggcagggcgagatcacgcgaacgcttgagcggctggacggc
cggtttgggccggaaacgagtgtcattccgctctatggcaacctttcccagcgggagcag
gatgcggcgatcaggccaacagagccgggcaagcgcaagatcgttctggcgacctcgatt
gccgagacctcgattacgatcgatggcgtgcgggtggtgatcgatagcggtttgcagcgg
ctcccagtgttcgagccttccaccggcatgacgcggcttgagacggtgaaggtgtcacgc
gcctcggcagaccagcgggcaggacgcgcggggcgaaccgaaccgggtatcgccatccgg
ctctggcatgtggggcagacggcggctttgccggcatttacgccgccgcagatattggcg
agcgacctttcaggactggcgctcgatcttgcccattggggcgtgaccgatcccgcctcg
cttgcctttctggatcaaccaccgcaaaccgcactgaacgaggcgcgcgcacttctgacc
agccttggcgcattggatgcgacattggccattaccccgcgtggccggaagatgcgggat
cttgccatgccccctcgcctctccgccatggtgattgcagcacatgacgccggacacggc
gttgaggcagcaatgctggcggtgcttttgaccgaacaggggcttggcggcagcgatatc
gatctggaggaaaggcttcggcgtttcagatatgagaagggtgagcgtgcctcggctgcc
aaaggtctggccaaacggatcgcctctttccttggcgggggcgcgcaaagtgcggcggct
gaacccatcaccgccggggagcttttgctgcatgcttaccccgatcgcatcgcttttcag
cggggcggacgcggacgttatgtgatggccaatggccggggtgcagagctggccgaaaca
gaacgtcttgccacggaaaaaatgcttgttgtggctgacgtgaccgggcgggccgcacag
ccacgcattctggccgcggccttaatctgccgcgaagacgtggaagagcatctgccggat
gcaatccgtagggaagaccagctgttcttcgacaaggccagcggccaggttcgagcgcgc
cgcgtcacgcgtattggcgcgatcattctggaagagacgccgctgggaaaaccgagcggc
gaaaaagccgctctcgcgcttgccaacggcattcgcgagcacgggcttgatatcatgacc
ttttccaaggaggcgcaacagctgcgccagcgcctgggctttctgcaccgcacgatcggt
gaaccgtggccggatacgagcagcgaggcgctggttgcgcgcctgcacgaatggttcgtg
cctttccagcaggatgccaggagccttcaggaaatcaggtccagcggcatcatggacggg
cttctttcgctggtgccgcatgcggcacaacgggaactgaccaaactgctgccgacgcat
tttgaggcaccgaccggccagaggcatgccatcagttatgatggcgaggagccgacgctg
accattcgtgtgcaggagctgttcggcctgaagcagcacccggcagtggcaggcggcaaa
ttgccactgctgctggaattgacctcgcccgcgcacaggccgatacagaccacacgggat
ttgcccggtttctggtcgggctcgtggaaagacgtgcgggcggatatgcgtggacgctac
ccgcgccacccctggccggaagacccggccaacgcgcaaccgaccaatcgcgtgaagcca
cgcggaacgtga
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