Agrobacterium rubi: G6M88_13055
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Entry
G6M88_13055 CDS
T08058
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
arui
Agrobacterium rubi
Brite
KEGG Orthology (KO) [BR:
arui00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arui03016
]
G6M88_13055 (rnd)
Enzymes [BR:
arui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
G6M88_13055 (rnd)
Transfer RNA biogenesis [BR:
arui03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
G6M88_13055 (rnd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PKS_DE
Motif
Other DBs
NCBI-ProteinID:
QTG01261
UniProt:
A0AAE7R4M4
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All DBs
Position
1:complement(2713402..2714559)
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AA seq
385 aa
AA seq
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MIETTTALAEACKELAKSDFITIDTEFLRETTFWPQLCLVQMASSTLEVLVDPLAKDLDL
TPLFELMADASVVKVFHAARQDIEIIHHLGGLIPHPIFDTQVAAMVCGFGDSISYDQLVQ
RIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALQSQLEREGRSSWLKEEM
DILESVETYDMHPDDAWLRLKSRLRKPTELAILKFIAAWREREARSRNVPRSRVLKDDAI
FEIAQQQPKDTEALSRLRTIPKGWERSSSGTAIIETVNAALALPKADMPHPPRQSHSPEG
NGAAVELLKVLLKLTADKHGVAAKVIANSEDLDRIASEGEEAVVPALSGWRRDLFGEPAL
KLIRGEVALRFAGKKVEALELPQQI
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgattgagacgacaacagcactcgccgaagcctgcaaggaactggcgaaatccgatttc
attaccatcgatacggaatttctgcgcgaaacgactttctggcctcagctgtgtctcgtt
caaatggcaagctcgacgctggaagtgctggtcgaccctcttgccaaagacctcgatctg
acgccgctcttcgaactcatggccgacgccagtgtcgtcaaggttttccacgccgcccgc
caggacatcgaaatcatccaccacctcggtggtctcattccgcatccgatcttcgacacg
caggtcgcggcgatggtctgcggtttcggtgattccatttcctacgatcagctcgtccag
cggatcaagaacgtccagatcgacaagtcgtcgcgcttcaccgactggagccgtcgtccg
ctgactgaaaagcagctggattatgcgctggccgacgtcacccatctgcgcgacgtttat
ctggcgctgcaatcgcagctggaacgtgaaggccgctcttcctggctgaaggaagagatg
gacattctcgaatcggtcgagacctacgacatgcatcccgacgatgcgtggctgcggttg
aaatcccgccttcgcaagccgacggaactggccatcctcaaattcatcgccgcatggcgt
gagcgggaggcgcgctcacgcaacgtgccgcgctcgcgggtgttgaaggacgatgcgatc
ttcgagatcgctcagcagcagcccaaggataccgaggctctgtcgcgcctgcgcaccatt
cccaagggttgggagcgctcctcgtccggcactgccattatcgagacggtcaatgcagcg
cttgccttgcccaaggctgatatgccgcatccgccgcgccagagccattcacccgaaggc
aacggtgctgcggtcgaacttctcaaggttttgctgaagctaacggctgacaagcatggc
gtcgccgccaaggtcatcgccaacagcgaagatctcgatagaatcgcgtcagagggcgaa
gaagcggtcgtccctgctttgtctggctggcgtcgcgatctgttcggcgaaccggcgttg
aagctcattcgtggcgaagttgcgcttcgttttgccggcaagaaagtcgaagcactggag
ctgccgcagcagatttga
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