Agrobacterium rubi: G6M88_13225
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Entry
G6M88_13225 CDS
T08058
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
arui
Agrobacterium rubi
Pathway
arui03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
arui00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G6M88_13225 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arui03021
]
G6M88_13225 (rpoC)
03400 DNA repair and recombination proteins [BR:
arui03400
]
G6M88_13225 (rpoC)
Enzymes [BR:
arui01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G6M88_13225 (rpoC)
Transcription machinery [BR:
arui03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G6M88_13225 (rpoC)
DNA repair and recombination proteins [BR:
arui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G6M88_13225 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QTG01291
UniProt:
A0AAE7R4P6
LinkDB
All DBs
Position
1:2752766..2756974
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPSVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSMKQNQLLNEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRTELAETTSDLKQKKFMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDLGELHHALE
NKVVTLHAKIRGRFKTVDADGKPVSKIHETTPGRMLIGELLPKNVNVPFETCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFTHACRAGISFGKDDMIIPETKVKIVGDTETL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEDMMARIKAVEFDPETGRQKPMNAIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNSTDCGTDKGLTMTAIVDAGQVVASLGARILGRT
ALDDIDNPVTGENIVRAGKLMDEADIATIEKSGIQSVRIRSALTCEIQVGVCGVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIQIKNRN
SLRNSDNILIAMGRNMSVTILDERGVERSSQRVAYGSKLFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPCIVIKDASG
NVAKLARGSEARFQLSVDAILSVEPGMKVFQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVQIEPAEDGVEPVEYLIPKSKPFHLQEGDYIE
KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSHYIVGDSVDRIEMEDNNDRLIDEGKKPSYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATGRDELIIEERKK
STGSSSANQMLQDMTDKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaacccgtcggtaccggcgcagcatttcgattcc
atccggatttcgattgcgagcccggaaaagatcctctcgtggtcttacggtgagatcaag
aagccagaaaccatcaactatcgcacgttcaagcctgagcgcgatggtctgttctgcgcg
cgtatttttggaccgatcaaggactatgaatgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgtcgt
gagcgcatgggccatatcgagcttgctgcacccgttgcccacatctggttcctgaagtcg
ctgccttcgcgtatctcgacattgctcgacatgacgctgaaagatgtggagcgcgttctc
tacttcgaaaactacatcgtgaccgaacctggcctgacttcgatgaagcagaaccagctt
ctgaacgaagaagagtacatgatcgccgtcgacgagttcggcgaagatcagttcacagcc
atgatcggtgctgaagccatctacgaaatgctggcgtcgatgaacctcgaaaagatcgcg
ggcgaccttcgcaccgagcttgccgagaccacatctgacctgaagcagaagaagttcatg
aagcgtctcaagatcgttgagaacttcatggaatccggcaatcgtcccgagtggatgatc
atgaaggtcgttccagtcattccaccggacctgcgtccgctggttccgctggatggtggc
cgtttcgcgacctccgacctgaacgatctctatcgccgcgtcatcaaccgtaacaaccgt
ttgaagcgcctgatcgagcttcgtgcgcctggcatcatcatccgcaacgaaaagcgtatg
ttacaggaatccgtcgatgcgctgttcgacaacggccgtcgcgggcgggtcatcacgggt
gccaacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttc
cgtcagaaccttctcggcaagcgcgtcgactattccggtcgttcggttatcgtcacgggt
ccggaactgaagctgcaccagtgcggccttccaaagaagatggcgctcgagctgttcaag
ccgttcatctacgcccgcctcgacgcgaagggttactcctccaccgtcaagcaggccaag
aagctggtcgaaaaagaaaagcctgaagtttgggatatcctcgacgaggtcatccgcgag
catccggttctgttgaaccgcgcgccaacgctgcaccgcttgggcatccaggccttcgaa
cccatgctggttgaaggcaaggcgatccagttgcatccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggccgttcacgttccactgtcgcttgaagcgcagctg
gaagcacgcgtgctgatgatgtctaccaacaacatcctgcaccctgcaaacggtcagcct
atcatcgttccgtcgcaggacatggtcctgggtctctactacctgtcgatcatgaaccag
aacgagccgggcgaaggcatggctttctctgatctgggcgaactgcaccacgctttggaa
aacaaggtcgtgacgctacatgccaagattcgtggccgcttcaagactgtggatgccgat
ggcaagccagtctcgaaaatccatgaaacgacgcctggccgtatgctcatcggcgaactt
ctgccgaagaacgtcaacgttcctttcgagacctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcactgcggccagaaagacacggtcatcttc
tgcgaccgtatcatgcagctcggctttacccatgcttgccgcgccggcatttcgttcggc
aaggacgacatgatcattccggaaaccaaggtcaagatcgttggcgacaccgaaaccttg
gtcaaggaatacgaacagcagtacaatgacggcctgatcactcagggcgaaaagtacaac
aaggtcgttgacgcctggggtaaggcaaccgaaaaggtcgccgaagacatgatggcccgc
attaaggctgtcgagttcgatccagagaccggtcgtcagaagccgatgaacgccatctac
atgatgtcccactccggtgcgcgtggttcgccgaaccagatgcgtcagctgggtggtatg
cgcggcctcatggccaagccatcgggtgagatcatcgaaacgccgatcatttccaacttt
aaggaaggtctgaccgttaacgagtacttcaactcgacgcacggtgcccgtaagggtctg
gcagacacggccttgaagacggcgaactccggttacctgacacgtcgtctcgttgacgtc
gcgcaggattgcatcgtcaactccacggattgcggcaccgacaagggcctcaccatgact
gccatcgttgatgccggtcaggtcgttgcctcgcttggcgcacgtatccttggtcgtacg
gctctcgacgatatcgacaatccggtcacgggcgaaaacatcgtcagggctggcaagttg
atggacgaagccgatatcgcgaccatcgaaaagtccggcatccagtccgttcgtattcgc
tccgctctgacctgcgaaattcaggttggcgtttgcggcgtctgctacggtcgtgacctt
gcacgtggtacgccggttaacatgggcgaagcggttggtgttattgccgcgcagtccatc
ggtgaaccgggcacacagctcaccatgcgtacgttccaccttggtggcacggccaacgtg
gtcgaccagtcgttcctggaagcatcgtatgaaggtacgatccagatcaagaaccgcaac
agcctgcgcaactctgacaacatcctcatcgcgatgggccgtaatatgtccgtgaccatt
ctcgatgagcgtggcgtcgagcgttcctcgcagcgtgtggcctatggctccaagctgttc
gtggatgatggcgacaaggtaaaacgcggtcagcgtctggctgagtgggacccttacaca
cgtccaatgatgacggaagtggaaggcaccgttcacttcgaagatctggtcgacggtctt
tccgttctggaagcgaccgacgaatccaccggtatcaccaagcgtcaggttatcgactgg
cgttcgacaccacgtggttcggatctgaagccttgcatcgtcatcaaggacgcttccggc
aatgtggccaagcttgcacgtggcagcgaagctcgcttccagctgtcggttgacgccatc
ctgtcggtcgagcctggtatgaaggtcttccagggtgacgtgcttgcacgttcgccattg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgtgttgccgaactcttcgaa
gcgcgtcgtccgaaggatcacgctatcatcgccgaaattgatggtacgatccgcctgggc
cgcgactacaagaacaagcgtcgcgttcagatcgagcctgcggaagacggtgtcgagcca
gtcgaatacctgatcccgaagagcaagccgttccaccttcaggaaggcgactacatcgag
aagggcgaatacattctcgatggtaacccggcaccgcacgacatcctggcgatcaagggc
gtagaagctttggcttcctacctcgtgaacgaaatccaggaagtctaccgcttgcagggc
gttgtcatcaacgacaagcacattgaagtgatcgtgcgtcagatgctgcagaaggtggaa
atcaccgatgcaggtgactcgcattacatcgtcggcgacagcgttgatcgcatcgagatg
gaagacaacaacgatcgtctgatcgacgaaggcaagaagccatcctacggcgacccggtt
cttctgggtatcaccaaggcatcgctgcaaacgccatcgttcatctcggctgcttcgttc
caggaaaccacgaaggttctcacggaagctgctatcgccggcaagaccgacacgttgcag
ggtctgaaagaaaacgtcatcgtcggccgcctcatcccggccggtaccggcggcaccatg
acccagatccgccgcatcgcgacgggccgcgacgaactcatcatcgaggagcgcaagaag
agcacaggctcgtcttccgcaaaccagatgttgcaggacatgacagacaaggctccagct
gccgagtga
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integrated database retrieval system
