Agrobacterium rubi: G6M88_16785
Help
Entry
G6M88_16785 CDS
T08058
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
arui
Agrobacterium rubi
Pathway
arui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G6M88_16785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arui03019
]
G6M88_16785
03009 Ribosome biogenesis [BR:
arui03009
]
G6M88_16785
Enzymes [BR:
arui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G6M88_16785
Messenger RNA biogenesis [BR:
arui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G6M88_16785
Ribosome biogenesis [BR:
arui03009
]
Prokaryotic type
rRNA helicases
G6M88_16785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QTG02095
UniProt:
A0AAE7USP8
LinkDB
All DBs
Position
2:544145..545992
Genome browser
AA seq
615 aa
AA seq
DB search
MTETQGIAPAIAQALEKRGYNDLTPVQKAMLAPELDGQDALVSAQTGSGKTVAFGMAIAP
TLLQKNGRFGQAGAPLGIAIAPTRELAMQVMRELEWLYEFTGVSIASCVGGMDIRAERRA
LERGAHIIVGTPGRLCDHIKRKALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPAER
RTLMFSATVSRSIAKLAESYQKNAVRVATTSEQKQHVDIEYRAMVVSPSDRENAIINALR
FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELSQNERTHALQAMRDGRARVCVA
TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGISAIIVPMSQRRKAERLL
EGAKVSPAWVRPPSAEEITQRDGERLLADASLTENVNDNERDFVAKLLEQHGAEKVAAAF
VRLYHSGRSAPEDIAEVSIDGARKPRRDGFETVENNEPRRDRSDFSDSGWFTLSVGRKQN
AEPRWLIPMLCRFGKLTRQDIGAIRMQQTETYVELAADAVDRFTSALGKDMMLEKGIRVK
AMDGKPDMTGGNREDTRPAKAQRKFAAKPAAGGERRTDDKPWKKKPAPAGDRPAQFDGKK
DKPFEKRAPKKKDRT
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaacccagggtatcgccccggcgattgcacaggcgttggaaaaacgcggctat
aatgatttgacccccgtgcagaaggccatgcttgcgcctgaactggacggacaggacgcg
ctggtttccgcccagacgggttctggcaagaccgttgccttcggcatggccattgccccg
acgctgttgcagaagaatggccgctttggccaggccggcgcgccactgggcatcgccatt
gccccgacccgcgaacttgccatgcaggttatgcgcgagctggaatggctctacgaattc
accggcgtttccattgcgtcttgcgttggcggcatggatatccgcgccgagcgccgtgcg
ctggagcgcggtgcccatatcatcgtcggcacgccgggtcgtctgtgcgaccacatcaag
cgcaaggcgctggacctttcgtccattcgcgccgtggtgctggatgaggccgacgaaatg
ctcgacctcggtttccgcgaagacctggaattcattctcgaggaatcgcctgccgagcgc
cgcacgctgatgttttcggcgacagtttcgcgcagcattgccaagcttgccgaaagttat
cagaagaatgccgtgcgcgtggcaacgacatccgagcagaagcagcacgtcgatatcgaa
tatcgcgccatggtggtttcgccatccgaccgcgaaaacgccatcatcaatgcgctgcgc
ttttacgaagcccgcaatgccatcgtgttctgctctacccgtgctgccgtcaaccacctg
accgcgcgcctgaacaatcgcggtttctccgtggtcgccctctcgggcgaattgagccag
aacgagcgcacgcatgctttgcaggccatgcgtgacgggcgtgcccgcgtttgcgtggca
accgatgttgccgcacgcggtatcgacttgccgggtctcgagctcgtcatccatgccgat
ctgccgaccaactccgatacgcttctgcaccgctctggccgtacgggtcgtgccggacag
aagggcatcagcgcgattatcgtgccgatgagccagcgtcgcaaggccgagcgcctgctc
gaaggcgccaaggtcagcccggcctgggttcgcccgccatctgccgaagaaatcacccag
cgggacggcgaacgtttgctggcggatgcttctttgaccgaaaacgtcaatgataacgaa
cgcgatttcgtcgccaagcttcttgaacagcacggcgccgaaaaggtcgctgctgctttc
gtgcgtctctaccattcgggtcgttccgcaccggaggacattgccgaggtttcgattgat
ggcgcccgcaagccgcgtcgcgacggtttcgagaccgttgaaaacaacgaaccacgccgg
gatcgttccgacttttccgatagcggttggtttacgctctccgtcggtcgcaagcagaat
gccgagccacgctggctgatccccatgctgtgccgcttcggcaagctgacgcgtcaggat
atcggcgccatccgcatgcagcagaccgagacctatgtggaactggcggctgacgcggtg
gatcgtttcacctccgcgcttggcaaggacatgatgctggaaaagggcattcgcgtcaaa
gccatggacggcaagccggacatgacgggcggcaaccgcgaagacacgcgtcctgcaaag
gcacagcgtaaattcgccgccaagcctgcagccggtggcgaacgccgcacggacgacaag
ccctggaaaaagaagcccgcccctgccggtgacagaccggcgcagttcgatggcaaaaaa
gacaagcccttcgaaaagcgcgcgcctaagaaaaaagatcgtacctaa
DBGET
integrated database retrieval system
