Agrobacterium rubi: G6M88_19790
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Entry
G6M88_19790 CDS
T08058
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
arui
Agrobacterium rubi
Brite
KEGG Orthology (KO) [BR:
arui00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arui03032
]
G6M88_19790
03400 DNA repair and recombination proteins [BR:
arui03400
]
G6M88_19790
Enzymes [BR:
arui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
G6M88_19790
DNA replication proteins [BR:
arui03032
]
Prokaryotic type
DNA Topoisomerases
G6M88_19790
DNA repair and recombination proteins [BR:
arui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
G6M88_19790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QTG02625
UniProt:
A0AAE7R679
LinkDB
All DBs
Position
2:complement(1206960..1207976)
Genome browser
AA seq
338 aa
AA seq
DB search
MNQLPIRLLKKIGLTYVSDQEPGIARERRGKGFAYRLPDGELLSDKVEITRLKSLGVPPA
YEKVWICIDPTGHLQATGYDARGRKQYRYHPEWHAFRGDTKFYQLKTFGEALPAIRRRAA
SDIAKQERGQNVTLAALVLLLDAAYLRVGNKTYLETNGTYGATTLLKKHITFGETIELRF
AAKGGQRVKRKLKHPRLQRILENIADLPGRQLFVWQDDEGVVHPVDSSALNAYISQSAGE
GISAKTFRTWGGTLAAFGHATRALESGERPTIKSMCVAASEELSNTPTICRKSYVHPAVL
DIATEEKSVRRLEKVLAGEIAPTAGLRADERKLLAFLP
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagttgcccatccgtttactaaagaaaatcgggctcacctatgtcagcgatcaa
gagccgggcatcgcgcgcgaacgtcgcggtaaagggttcgcctatcgcttgccggatgga
gagcttctctccgacaaagtcgagatcacccgcctgaaatcgctcggcgttccaccagcc
tacgaaaaggtgtggatctgcatcgacccaaccggccacttgcaggccacgggctacgat
gcgcgcggccgcaaacagtatcgctaccatccggaatggcacgcgttccgcggcgacacg
aaattctatcagctcaagacatttggcgaggctttgcccgccatccgcaggcgtgcggca
tccgatatcgcgaaacaggagcgcggacagaatgtaacgctggccgccttggtcctgctt
cttgacgcagcctatctgcgcgtaggcaacaagacctatctcgaaaccaacggcacctat
ggcgcgaccacgctgctgaaaaagcacatcaccttcggcgaaacgatcgagctacgtttt
gcggccaagggagggcagcgggtcaaacgcaagctgaagcacccccgcctgcagcgcatt
ttggaaaacattgccgatcttcccggcagacaactgtttgtctggcaggatgatgagggc
gtcgttcatcccgtcgattccagcgcactcaatgcctacatttctcaaagcgctggcgaa
ggcatctcagcaaaaacgtttcgcacatggggcggcacgcttgccgcctttgggcatgcg
acgcgcgcgctcgaatccggtgagcgaccaaccatcaaaagcatgtgcgttgctgcctca
gaagaattgtcgaacaccccgacgatctgccgcaagagctatgttcacccagccgtgctg
gatatcgcgacggaggaaaagtccgtcaggcgcctcgaaaaagtgcttgctggcgagata
gcgccgacagccggtttgcgagccgacgagcgtaagttactggcatttttgccgtaa
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