Agrobacterium rubi: G6M88_23840
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Entry
G6M88_23840 CDS
T08058
Name
(GenBank) autotransporter outer membrane beta-barrel domain-containing protein
Organism
arui
Agrobacterium rubi
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
He_PIG
Calx-beta
Big_9
fn3
SprB
Cadherin_5
Motif
Other DBs
NCBI-ProteinID:
QTG03636
LinkDB
All DBs
Position
pW2_73_2:complement(join(176389..179725,1..1838))
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AA seq
1724 aa
AA seq
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MTRFSTFIVQLMLAFAAGVPTVGVPSIAEAAYCATPKNATVNSGGSVSFEVGDCDGPSNI
GMTDPGIPPSHGTYSLPGQNPDSTEQVTYTNNGDGATSDSFYLLDEDNNQIVFNITINPS
RTASIAVSPSSRNEDSGAAFTYTVTLSQTSSSATTVNLSRSGTASSGTDYTGAVNSVVVP
ANATTASFPVTPVADSAVEADETVIYSVASGTGYGIGSPSSATATIINDDVPTASIAVAS
SSVAEDGAANLIYTVSLNQAAQSAVSIAFNVGGSASSGTDYAAVSSPLVIAAGQTSGTIT
INPTADSTVEPDETVVISLAAGSGYSVGSPNSATGTILNDDQPSLSINDVSLNEGDAGTS
NATFTVSLSQPAGAGGVSFDIAAADGTATAGVDYVASSLSAQTIPAGSSSATFTVLVNGD
TLNEPNETFFVNVSNVSGASVADAQGVGTIVNDDAVPSLSINDVSVNEGNSGTSTATFTV
SLSAASGQTVSVNYATADGTATAGSDYVARSGTLTFAPGTTAQGVAITVNGDTAVEPNEA
FSVGLSGASNASIARATGTGTVTNDDAVVTVGPASLPAATAGSAYSQTLSASGGTAPYTF
AVSAGTLPAGLSLSPAGVLSGTPTASGAFNFTATATDSAGSPTSGSRAYTLVVASPTITL
PATTLAGGTANQAYTAAINPATGGIAPYTYAVSTGALPAGITVNSASGGLSGTPTVTGSF
SFTLTATDSTTGSAGQASQSYSLSIVSPTLTITPSTLPAGAIGTAYSQTLSTSGGTAPYS
YVLSAGALPDGLTLTTGGVLSGTPTDTGSFTFTVTVTDTNGATGSANYTLATAAVVPGAP
TIGAATAGDGAASVSFTAPTANGGAAITGYTVTASPGGATATGAASPITVTGLNNGTAYT
FTVVANNSAGSSAASAASNSVTPVAAVQLPVANNVSATVAANSSVNPITLNITGGAATSV
AIASNPAHGATSISGTSITYTPTAGYSGADSFTYTATNTAGTSTAATVSITVSAPTFAFS
PAAGALTGATVGMAYSQTVAASGGASAYSYALSSGALPAGLTLNISTGVISGTPTTAGNA
SFTVTATDANNATGSAAYTLAVASEAVTLTVSPTSGALTSGTVGTAYSGSVSAMGGTAPY
TYGATGLPAGLSLNASTGTISGTPTSAGNSSIVVTVSDSSTPANTGDANYTLAIAAAPTA
AFTFSPSGGALTEAMAGEAYSQAISATGGAAPLIYNLSSGSLPNGVVLNVSTGELTGPLA
AGSEGDYSFTIQARDNNGDIGAASYTLKVAPRAVTVDDKVISVPAGSAPANVNLAAGATG
GPFVSGDLTFVEPASAGTVSIVNGEFAQAGGPTPTGWYLKFIPNPAYSGQVRVGFRLTSV
LGVSNTGTVTYNIGFSPTQVAEDIDNLVHGFVQTRQNMIASTIKVPGLMERRRMETATDP
VTARMMPSAEGMTLGFSTSLAQLESARDAADGQGGGYFSPFNIWIDGTFLAHNREENGNK
WGNFAMVSAGADYLLSDKALIGVSFHYDRMTDPTNEDATLTGNGWLAGPYASFEIGKNVF
WDTSLLYGGSANDIDTQFWDGTFDTSRWLFDTSIKGQWKLDEVTVLTPKLRAVYMSETVD
DYEVTNGAGDILDLDGFTSEQLRASLGAEISRQITLDNDLVLTPKIGATAGFSGLDGSGA
FAQVSAGLSMQTSQEFDIDFGLLFNIEGDGEQSAGARVGISGRF
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgacaagattttcaacgtttatcgtccagctgatgttggcatttgcggccggtgtacct
acggttggtgtgccttccattgcagaagcagcttattgcgcaactcctaaaaatgccact
gtcaactcgggcggatcggtatcctttgaggttggcgactgcgatgggccatcaaatatt
ggcatgaccgatcccggcatacctccttcgcacggaacttacagtcttcctggtcaaaat
cctgacagtaccgaacaggtgacgtataccaataatggagatggtgcgacatcggactcg
ttttatctgttggacgaagacaacaaccagattgtctttaatatcaccatcaacccctcg
cgcactgccagcatcgcggtgagcccgtccagccgtaacgaagacagcggcgcggccttc
acctacactgtgacactgagccagaccagcagctcggcgacaacggtgaacctgagccgc
agtggcaccgcctccagcgggacggattacaccggcgccgtgaacagcgtggtggtgccc
gccaacgctaccaccgccagctttcccgtcacgccggtcgccgacagcgcggttgaggcc
gacgagacggtgatctacagcgtcgccagcggcacaggttacggtatcggcagcccgtcc
agcgccacagccacaatcatcaacgatgacgtgcccaccgcgtcgatcgcggtggcttcg
tccagcgtggcagaggacggcgcggccaacttgatctacaccgtctcccttaaccaggcg
gcgcaaagcgcggtgtcgattgctttcaatgttggcggcagcgcgagttccggcactgac
tacgcagccgtcagttcgccgctggtgatcgcggccggccagaccagcggtaccatcacc
atcaatccgaccgccgacagcaccgtcgaacccgacgagaccgtggtgatcagcctggcc
gcgggtagcggctacagcgtgggctccccgaacagcgccaccggcaccatcctcaacgac
gaccagccgtcgctgtcgatcaacgacgtgtcgttgaacgaaggcgatgccggcaccagc
aacgccaccttcaccgtctcgctgagccagccggccggagccggcggcgtcagcttcgat
atcgccgccgccgacggcaccgcaaccgcaggcgtggactatgtcgcgtccagcttgagc
gcgcagaccatccccgccggcagcagcagcgctacctttaccgtgctggtcaacggcgac
acgctcaacgagccgaacgaaaccttcttcgtcaacgtcagcaacgtctccggtgccagc
gtggccgatgcgcagggcgtcggcaccattgtcaacgacgatgcagtgccatcgctgtcg
atcaacgacgttagcgtcaacgaaggcaacagcggtaccagcacggccaccttcacggtg
agcctgagcgcagccagcggccagaccgtctcggtcaactacgccaccgctgacggcaca
gcaaccgccggcagcgactatgtcgcccgctccggcacgctgactttcgcgccaggcacc
actgcgcaaggcgtggctatcaccgtcaatggcgacactgcagtcgagcccaacgaggcc
ttcagtgtcggcctgtccggtgccagcaacgccagcattgcccgtgccaccggcaccggc
accgtcaccaacgacgacgcagtggtaacggtcggtccggcatcgctgccggcggcgact
gcgggcagcgcctacagccagaccctcagcgccagcggcggcacagcgccttacaccttc
gcggtcagtgccggcacgttgccggccggattgagtttgagccccgccggcgtgctgtcc
ggcacgcccactgccagcggcgccttcaacttcaccgcgactgccaccgacagcgccggc
agtcccaccagcggcagccgcgcctacacgctggtcgtggctagcccgacgattaccctg
ccggccactaccctcgcgggcggtactgctaaccaggcgtacaccgccgccatcaatccg
gcgaccggtggcatcgcgccctacacctatgcggtcagcaccggcgcgttgccagctggc
atcacggttaacagcgcgtctggtgggctcagcggcacaccgacggtgaccggcagtttc
agtttcaccctgaccgcgaccgacagcacaaccggcagcgccgggcaggcaagccagagc
tacagcctgagcatcgtgtcaccgacgttgaccatcacaccgtcgacattgccagcaggc
gccatcggcacggcctacagccagaccttgagcaccagcggcggtaccgcgccttacagc
tatgtgctcagcgctggcgccctgccggacggcctgacactgacaacgggaggcgtgctg
tcggggacaccgaccgacaccggcagtttcaccttcaccgtgacggtaaccgacaccaac
ggtgcgacaggcagcgccaactataccctggcgacggctgcggtggtccctggtgccccg
acgatcggtgcagcaacggcaggcgatggcgcggcaagcgtgtcgttcactgctcctacg
gccaatggtggggctgcgatcaccggatataccgtcacggccagccccggcggcgcaacc
gcgaccggtgcggcgagcccgatcacagtgaccggcctgaacaacggcacggcctatacc
tttaccgtcgtcgccaacaacagcgccggctcgagcgccgcatccgctgcatccaattcg
gtaaccccggtggcggccgttcagcttcctgttgccaataatgtcagcgcgacggttgcg
gccaattcgtcagtcaatccgattaccctcaacattaccggtggcgctgcaacctctgtg
gccatcgcatcgaaccccgcccatggcgcgacgagcatctccgggacatccatcacctac
acgccgacggctggttattccggcgctgacagtttcacctataccgcgaccaacacggcc
ggaacctcgacggccgcaactgtcagcatcacggtatcggccccaacctttgccttctca
ccagcggctggcgcgctgacgggcgcaactgtcggaatggcttacagccagactgttgca
gcctccggcggcgcttcggcctactcctatgccctgagttccggagcgcttcctgcgggc
ttgacgctgaatatctcgacaggggtgatctccggcacaccgacgacggctggaaacgca
agcttcaccgtgactgcaaccgatgccaacaatgcaacaggcagtgcggcctatacgctc
gcagtggcatcggaagccgtaacactcaccgtctcgccaacatcgggtgccttgacgtct
ggaacagtcggaaccgcctattccggctctgtcagtgccatgggtgggaccgcaccttac
acctatggcgctaccggtctgccagcgggcctttctctcaacgcttcgaccggtacgatc
tctggcacaccaacctcggctggcaattcttctattgtggtaacggtcagcgacagcagc
actccggccaataccggggatgcgaattacacactggcgattgcggctgctccgaccgct
gcctttaccttttcgccctccggcggtgcgctgacggaggcgatggctggcgaagcctat
agtcaggccatctcggctacaggcggagcagcgccgctgatctacaacctctcgtctgga
agtttaccgaacggcgtggtgctcaatgtctcgacaggtgaactcactggcccactggcc
gccgggtccgaaggtgactacagctttaccattcaggcacgcgacaacaacggtgatatc
ggcgcggccagctataccttgaaagtcgcacctcgtgccgtcaccgtcgatgacaaggtc
atatctgttcccgctgggtctgcacctgcaaacgtcaatctggcggcaggcgcgacgggt
ggtccgttcgtttctggcgatctgacgttcgtggagcctgcaagtgctggcactgtcagt
atcgtcaatggcgagtttgcccaggcaggtggcccaacgccgaccggctggtacctgaag
tttattcccaacccggcatattcgggtcaggtccgcgtcggtttccgtctcaccagtgtg
ctgggtgtgtccaataccggcacggttacctacaatatcggctttagcccgacccaggtc
gcagaagatatcgacaatctggtccacggtttcgttcagacacggcaaaacatgatagcc
tcgaccatcaaggttcccggcctgatggagcgccgtcgtatggaaacggccaccgatccg
gtcactgcccgcatgatgccatctgcagaggggatgacgcttggcttctcgaccagcctt
gctcagcttgaatcggcaagagatgccgctgatggtcagggaggggggtacttctctcca
ttcaacatctggatcgatggaaccttcctagcccataaccgcgaggagaacggcaacaag
tggggcaactttgcaatggtttccgccggggccgattacctgctttcggacaaggcgttg
atcggggtctctttccattacgatcggatgacagacccaaccaatgaggatgcgacccta
accggcaatggctggctcgccggcccctacgcttcgttcgagattggcaagaatgtgttc
tgggatacgagcctgctctacggcggctctgccaatgatatcgatacccagttctgggac
ggcacattcgataccagtcgctggctgttcgacacctccatcaaagggcagtggaaactc
gacgaggtgacggtgctcacgcccaagctccgtgccgtctacatgtcggaaacggtcgat
gactacgaggttacgaatggcgctggcgatatccttgatctcgacggcttcaccagcgag
cagttgcgcgccagccttggtgcagaaatttcgcgacagatcacgctcgacaacgatctc
gtgctaacgccgaagatcggcgccacagctggcttctccgggctggatggctccggtgca
ttcgcacaggtgtccgctggattgtcgatgcaaacaagccaggagttcgacatcgatttc
ggcttgctgttcaacattgagggcgatggcgagcaatcggctggtgcaagagtgggaatt
agtgggcggttctag
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