Agrobacterium rubi: G6M88_24445
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Entry
G6M88_24445 CDS
T08058
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
arui
Agrobacterium rubi
Pathway
arui03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G6M88_24445 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arui03400
]
G6M88_24445 (ligD)
Enzymes [BR:
arui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G6M88_24445 (ligD)
DNA repair and recombination proteins [BR:
arui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G6M88_24445 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QTG03594
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All DBs
Position
pW2_73_2:complement(123385..126057)
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AA seq
890 aa
AA seq
DB search
MADNLSKYRSKRDFKQTSEPSGEVEVKASNRRRFIIQKHDATRLHYDLRIELDGVFKSWA
VTRGPSLNPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKTPEE
ALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDYAVDDNGAAVLDDNL
TSVASDRTMEAIAAGKGKKPKPFMTQGDTVKADAVWDSNEGLAAEERKAGTKTLPKKRSA
RPKAAKSNNTETAMPNFIAPQLCESLTRPPAGKGWIHEIKFDGYRVQMRVVGGEVTLKTR
KGLDWTSKWPAIAEAASALPDCIIDGEICALDERGAPDFAALQAALSEGTTDDLVYFAFD
LLFAGDEDLRELPLTERKSRLETLMSDAGEDARLRFVEHFETGGDAVLKSACRLSLEGIV
SKEADAPYASGRTKTWAKSKCRAGHEVVIGAYAKSNGKFRSLLVGVFSGKHFVYVGRVGT
GYSAKTVQQLLPKLQEIEAAKSPFTGIGAPKTSDDIVWLKPELVAEIEFAGWTADGQVRQ
GAFKGLREDKPAAEVEAEEPATPSDVDVPDPETDKPPPKRSRRGAKEEVMGVMISSPDKA
LWPDAGDKKPVTKVDLAQYHEAVGAWMIDHIKGRPCSILRSPDGIGGEQFFQRHAMPGTS
NLLELVTVFGDKKPYLQTDRVEGLAAIAQIGGIELHPWNCLPDQPEVPGRLVFDLDPGPD
VEFPAVVDAAREIRDRLEELGLVSFCKTTGGKGLHVVTPLVAPRGKELSWDEAKGFAHDV
CQDMARDNPDLYLIKMAKNQREGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWSQ
VKANLDPTRFTVRTVPGLLKQSTAWQDYSEGHRSLDQAIKRLSKARKASA
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaatctcagcaagtaccggtccaagcgcgatttcaagcagacgtcagagcca
agcggagaggtcgaagtcaaggcgtccaaccgtcgccgcttcatcatccagaagcatgat
gcgacacgactgcactacgatcttcgtatcgagctcgatggagtgttcaaatcctgggca
gtgaccagaggtccttctcttaatcctcatgacaagcggcttgcagttgaggtcgaagac
catcccctagactatggcgatttcgagggaacgataccgaagggtcaatatggcggcggc
acagttatgctgtgggatcgcggctactgggagcccgagggcaacaagacccccgaggag
gcactggcgaagggtgatttcaagttcactttggaaggtgaacgactgcatggaagcttt
gttttagtgaggatgcgcaacgaccgcgacggtggcaagcgtaccaactggttgctgatc
aaacaccgcgacgactatgcggtcgacgacaacggagcagcggtactggatgacaatctg
acgtcggtcgcttccgatagaaccatggaggcaatcgccgctggcaaagggaaaaagccc
aagccatttatgacgcaaggcgatacagttaaggcagacgcggtgtgggacagcaatgag
ggtcttgccgccgaggagcgcaaggctggcacgaagacgttgccgaagaagaggtcggct
cgaccaaaggcagccaagtcaaacaacactgaaacggcgatgccgaactttatcgccccg
cagctctgcgaaagcctaacacgtccacccgcgggcaaaggctggatccacgagatcaaa
ttcgacggctaccgggtgcagatgcgtgtcgttggcggtgaggtgacgctgaagacccgc
aaaggtctggattggacatccaaatggcctgcgattgcggaggcggcgtcggcgcttccg
gactgcatcattgatggtgagatctgcgcgctcgacgagcgaggtgcacccgacttcgcg
gctttgcaggcagcactgtctgaggggacgaccgacgatcttgtctatttcgcgttcgat
ctgctgtttgctggtgatgaagatctgagagagctccccctgacggagcgcaaatcccgt
ttggaaacactgatgtccgatgcgggcgaggacgcacgcctgcgtttcgtcgaacacttc
gagacgggcggcgacgccgtgctgaagtcagcatgccgtctatcgctcgagggtatcgtc
tccaaggaggcagatgctccttatgcgtccggccggacgaagacatgggcgaaatccaaa
tgtcgcgctggtcatgaagtggtcatcggcgcctacgccaagtccaatggaaaatttcga
tcgctgctggttggcgtcttcagcggcaagcacttcgtctatgtcgggcgtgtcggtaca
gggtatagcgcgaagacggtccaacaacttctgccgaagcttcaagagatagaagcggcc
aaatctccattcacaggaataggggcaccgaagacgtcagacgatatcgtctggctcaag
cccgagctcgtcgccgagatcgaattcgccggatggaccgcggacggccaagttcgacag
ggtgcgttcaaggggctgcgcgaagacaagcctgctgcggaggtggaagccgaagagccc
gcaacgccatcggatgtggatgtccctgatcccgagaccgacaagccaccacccaagcgt
tcccgcagaggcgcaaaggaagaggtcatgggcgttatgatctcaagccccgacaaggcg
ctctggccagacgcgggtgacaaaaagcctgtcaccaaggttgacctcgcccagtaccac
gaggccgtcggagcgtggatgattgatcacatcaaaggtcggccatgctcgatccttcgt
agccctgatggcattggtggtgagcaattcttccagcgccacgctatgcctggaacgtcg
aaccttctggagctcgttacggtctttggtgacaagaagccctatctacagactgatcgt
gttgaaggacttgccgccattgcccagatcggcgggatcgaacttcacccctggaattgc
ctgcccgatcagcccgaagttccgggcaggctggtattcgatcttgatccaggcccggac
gttgagtttccagcagtcgtcgacgccgcgcgcgagatacgcgaccggctagaagaactg
ggccttgtcagtttctgcaagacgacaggtggaaagggattacacgtcgtgacgccgctt
gtcgcgcccaggggaaaggagctgagctgggacgaagcgaaggggtttgcgcatgacgtc
tgtcaggatatggcgcgcgataatccggacctctatcttatcaagatggcgaagaaccag
cgggaaggccgaatattcctcgactacctgcgcaacgaccgaatggcgacggctgtcgct
ccgttgtctccaagagcacgtccaggtgctacggtgtcgatgcctttaacctggtcgcag
gtcaaggctaacctcgatccaacacgcttcacggttaggaccgtgccgggtcttttgaag
caaagcaccgcttggcaggattacagtgagggccacaggtcgctggatcaggctatcaag
cggctgagcaaagcccggaaggcgtctgcctga
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