Agrobacterium rubi: G6M88_25020
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Entry
G6M88_25020 CDS
T08058
Name
(GenBank) DeoR/GlpR transcriptional regulator
KO
K20271
DeoR family transcriptional regulator, repressor of opine catabolism and conjugal transfer
Organism
arui
Agrobacterium rubi
Pathway
arui02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
arui00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
G6M88_25020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
arui03000
]
G6M88_25020
Transcription factors [BR:
arui03000
]
Prokaryotic type
Helix-turn-helix
DeoR family
G6M88_25020
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DeoRC
HTH_DeoR
HTH_11
HTH_5
HTH_20
GntR
HTH_IclR
HTH_PafC
MarR
Mga
DUF7342
MarR_2
HTH_36
Motif
Other DBs
NCBI-ProteinID:
QTG03717
UniProt:
A0AAE7UTI8
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Position
pTiW2_73:65914..66690
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AA seq
258 aa
AA seq
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MVFNSTQDRQAKIVELLRDEQFLAIGRLTEHFQISVATARRDLSELHEAGLLRRTHGGAV
SVTQVTQDKPNAARAVWNRAEKAAIAGVVAGMIVEGDTVLLDAGTTALEVAKKLADRRNL
TFISNGLDIVEELTRGEGKSIYSVGGEYTETNRSFRGPLAEQFIRQFNVDKLILNAASID
VDRGLICTSSPVNASVARAMIEVSSRVIVVADHSKFTKSSLSVTARIEDVGVIVTDSGTR
TIIETIPEKLRKKFVVAN
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
ttggtgttcaactcgactcaggaccgccaggcgaaaatcgttgagcttttgcgcgatgag
cagtttttggctatcggcagattgacggagcacttccagatttcggtggccactgcgagg
cgcgacttgagcgaactccacgaggccggactcttgcgtcgaactcacggcggtgcggtc
agcgtcacgcaggttacacaggacaagccgaacgctgcccgcgccgtctggaatcgggcg
gagaaggcggccatagccggagtcgttgccggtatgatcgtcgagggtgacacggttctt
ctggacgccggtacaactgcgctggaagttgccaagaagctcgctgaccgcagaaacctc
accttcatctcgaatggtctcgacattgtcgaggaattgacgagaggggagggcaaaagc
atctattcggtcgggggcgagtataccgaaacgaaccgctccttccgcggccctttggcg
gagcagtttatccgccagttcaatgtcgacaaactcattctcaacgcggcgtcgatcgat
gttgatcgcggattgatctgtacgtcgtcgcccgtgaacgcgagtgtcgctcgcgccatg
atcgaagtttcgagccgcgtgatcgtcgtcgcggatcattcgaaattcacaaaatcgagc
ctctcggtgacggccaggatcgaggatgtcggcgtgatcgtcaccgactctggaacccga
accatcattgagacaataccggaaaagctgcggaagaagttcgttgttgcgaactag
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