Luidia clathrata (European starfish): 117287822
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Entry
117287822 CDS
T10152
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117287822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arun03021
]
117287822
03036 Chromosome and associated proteins [BR:
arun03036
]
117287822
Transcription machinery [BR:
arun03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117287822
Chromosome and associated proteins [BR:
arun03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117287822
PBAF complex
117287822
GBAF(ncBAF) complex
117287822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
117287822
NCBI-ProteinID:
XP_033624247
LinkDB
All DBs
Position
3:897607..928972
Genome browser
AA seq
1201 aa
AA seq
DB search
MCTEHTKMAVRKKDGGADFKFFESAETISQLDNVKSWLQRNCKRWIQAEPPTNKGLATLL
GQLLQFQEDAFGRHVSNPALTRLPMRCFMDFKSGGGLCNILMAVYKFKSDQGWRRFDFQS
PSRVDRNVEMFMSIEKNLLQNRCFSLPVVYIQDEVDPKMTAKLKDIIKRHQGTVTTEDIE
LATHIVYGPPPSLSEGEEYIRPVQRREKSMLVHWCYYPDSYDTWVPAADIHGDPEPGVTY
DGPWEVNAKWVLDLEEFNEWMNEEDYEIYEDGDAKEVVNIGSGNMRRKVYPTKQVSDEHA
HSPDVDRREKRGAAGKKRKRSPSPTSDKRKKKPGRSPAPIMKKRIPRDEEPEDLTKDMDN
PSVIPAVEEVQLPKIVSSRSGRDTELQPIKGGSLQEMDDLQDESQDKLNGEPAALVTGAE
LEEKEKQTPDTQEEQVTEQTHHIIVPSYSAWFDYNSLHAIERRALPEFFNGKNKSKSPEV
FMAYRNFMIDTYRLNPTEYLTFTACRRNLAGDVCAIMRVHAFLEQWGLVNYQVDAENRAA
PMGPPPTSHFHVLADTPSGLQPMQPAKPQQSASQQVATLGEKGSNKDAKPSDLQNFGLRS
DLYASKKQHAKGKSASASVTKDWTDQETLLLLEALEMYRDDWNKVSEHVGSRTQDECILH
FLRLPIEDSYLEDGPNALGPLSYQPIPFSQSGNPLMSTVAFLASAVDPRVASAAAKAAIE
EFSKMKEEVPTALVQTHIKRIEDSARAGMNTDNHLLDASGIAGTIPEPERQEEGGEGAKT
DGVEGGNEAAGTNKETTDKEVRIKEEAQSSDEKDKDSAEPMETSTPQKTPSEEDREKKDE
EEETMETGETKTEPVSQEAKETSKDDSQEAVGEPKSEEASKEDDKMGEDGEKTEDKDTAD
KIPKEKPEAVKKHEAEIPEGNVTTAAAASLAAAAVKAKHLAAVEERKIKSLVALLVETQM
KKLEIKLRHFEELETIMDREREALEYQRQQLLADRQQFHQEQLRAAEMRARQHAQAMAAM
QQAATGGPAPATATPSLPQLTGTPQVPTSTNPTGVVVAQPTVPQPEQAAIPQEETVTPEG
PGGDADTQRDQEEPPKKSESEEQPVEGGQDEESMDTGETPVEPVPPVQTQSTAAQNPAIV
AAVTGTSLPPTSVGSDSTLTQSPMQESNSQDGDASNTGSHIESTGSEAMSNQSPTTASPA
S
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaccgaacatacaaagatggctgtcagaaagaaggacggaggtgctgatttcaag
tttttcgagtcagccgaaacaatttcacagctagataatgtgaaatcgtggctacaaagg
aactgcaagaggtggattcaagcagaaccaccgaccaataagggactcgctactctgctt
ggtcagcttcttcagttccaggaagatgcatttgggcgtcacgtcagcaaccctgcactt
acaaggttaccaatgagatgcttcatggactttaagtctggtggcggactctgcaacatt
ctgatggccgtctacaagtttaaaagtgaccaaggatggaggcgttttgacttccaatcc
ccatctcgagtcgaccgcaacgtggagatgttcatgagtattgagaagaatcttcttcag
aatcgttgtttctctttgccagtcgtctacatccaggatgaggtggaccctaagatgacg
gccaaactcaaagacatcatcaaaagacaccagggaactgtgactactgaggatattgaa
ctagcaacacacatagtgtatggaccacccccatcattgagtgaaggagaggaatacata
cgcccagtacagcgacgagagaagtctatgttagttcattggtgctattatcccgacagc
tacgatacatgggtaccagcagcggatatccatggtgacccagaaccaggggtaacttat
gatgggccttgggaagtaaatgctaagtgggtgcttgacttggaggagttcaacgagtgg
atgaatgaagaagattatgaaatatatgaagatggtgatgcaaaggaagtcgttaatatt
ggatctgggaacatgaggagaaaagtctacccaacgaagcaagtgtcagatgagcatgcg
cacagtccggatgttgacaggagagaaaagcgaggagctgccgggaagaagagaaaacga
tctccatctccaacctcagacaagaggaaaaagaaaccaggacggagtcctgctcctatt
atgaagaaacggatcccaagagatgaggagcctgaagatctgactaaagacatggataat
ccttcagtcataccagctgtagaagaggtccaactacctaagatagtttcaagtcgaagt
ggtcgtgacacagagttacagccaatcaaaggaggatccttacaggagatggatgatcta
caagatgaatctcaagataagttgaatggtgaaccagcagccttagtgacaggtgcagag
ctagaagagaaagagaaacaaaccccagacactcaggaagaacaagtgactgaacaaacc
caccacatcatcgtaccaagctactctgcatggtttgattataacagtctccatgccatc
gaaagaagagcactaccagagttcttcaacggcaagaataaatccaagtctcctgaagta
ttcatggcatatcgtaacttcatgattgacacataccgcctgaacccaacggagtatctc
accttcacagcgtgtcgaaggaaccttgccggagatgtgtgtgctattatgagggttcat
gcattccttgagcagtggggtctcgtcaactaccaggtagatgctgagaatcgtgcagca
cctatgggtcctccacctacatctcacttccatgtattagctgataccccatcaggttta
caacccatgcaacctgccaaaccacagcagtctgcctctcaacaagttgctacccttgga
gaaaagggctcaaacaaagacgctaaacctagtgacttgcaaaactttggccttaggagt
gatctgtatgcctccaaaaaacaacatgctaagggtaaatccgcctcagccagcgtgact
aaagactggacggatcaagaaacacttcttctcctagaagctcttgagatgtatcgagat
gattggaataaggtctcggagcatgtcggctcaaggactcaagatgaatgcatcttacac
ttcttgagacttcctattgaggatagttacttggaagatggacctaatgctctaggacct
ctaagctaccaacctatccccttcagtcagtctggtaacccgttaatgagcacagttgct
ttccttgcatcagcagttgatccaagggtagctagtgcagcagcaaaagcagctattgag
gagtttagcaagatgaaagaggaggtccctacagctctagtccagacccatatcaagcgt
atcgaagactctgcccgagccggtatgaatacagataatcatcttcttgatgctagcggt
atcgctggaaccatcccagagcctgagagacaagaggagggaggagagggagctaaaaca
gatggagtagaaggaggtaacgaggcagctgggaccaacaaagaaaccactgataaggag
gtcagaataaaagaagaagctcagtcatccgatgagaaagacaaagattcagctgagcca
atggagacatctactcctcagaaaacaccatctgaagaagatagagagaagaaagatgag
gaggaagaaacgatggagactggcgagacaaaaacagagccagtatcacaagaagcaaag
gagacgagcaaagatgattcccaagaagcagtgggtgaaccgaagagtgaagaagcatct
aaggaggatgacaagatgggagaggatggagagaagactgaagacaaagacacagcagac
aagattcctaaagagaaacctgaagcagttaagaaacatgaagctgagatacctgaaggg
aacgttactacggctgctgctgcatccttggctgctgctgctgtcaaagcaaagcacttg
gcagcagttgaagaacgcaagatcaagagcctcgtggccctcctcgttgagactcagatg
aagaaacttgagattaaattacggcactttgaagagcttgagaccatcatggaccgagag
agggaagcgctggaataccaacggcagcaactcctggccgacagacaacaattccatcag
gagcagttgagggcagcagagatgcgcgctcgtcaacatgcgcaggcaatggccgccatg
cagcaagctgctacaggagggccagcaccagctactgccacacctagcttaccacaactc
acaggtaccccacaggtacccaccagcactaaccctacaggcgtcgtagtagcccagcct
actgtccctcagcctgaacaagcagctataccccaggaagagacggttacccccgagggc
cctggtggagatgctgatacccagagagatcaagaggaacctcctaagaaatcagagagt
gaggagcaaccggtggagggaggacaagatgaggagagcatggatactggtgaaacccca
gtagagccagttcctccagtgcagactcaatcaaccgctgctcagaatcctgctattgtt
gctgcagtaacagggacatccttaccccctacatcagtaggaagtgatagcactcttaca
cagagcccaatgcaagagtccaatagtcaagatggtgatgccagcaacacaggaagtcac
atagagagtacagggagtgaagccatgagcaaccagtcaccaactactgcatctccagct
tcataa
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integrated database retrieval system
